Browse Element(s) Details


Os.10401.1.S1_s_at

Description gb:AK070510.1
DB_XREF= gi:32980534
TID=Os.10401.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.10401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056B21, full insert sequence.
FL= gb:AK106127.1 gb:AK070510.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4235011/11MtN3/saliva family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42299OsAffx.29629.1.S1_at11/118+26571876..26573902hypothetical protein
LOC_Os08g42310Os.54053.1.S1_at11/118+26575058..26579637expressed protein
LOC_Os08g42310Os.54053.2.S1_at11/118+26575058..26579637expressed protein
LOC_Os08g42320Os.27249.1.S1_at11/118+26580431..26583549expressed protein
LOC_Os08g42330NANA8+26586854..26587207hypothetical protein
LOC_Os08g42340NANA8+26589773..26590264hypothetical protein
LOC_Os08g42350Os.10401.1.S1_s_at11/118+26593109..26595951MtN3/saliva family protein, expressed
LOC_Os08g42360OsAffx.17473.1.S1_at11/118+26608089..26609857hypothetical protein
LOC_Os08g42370Os.26668.1.S1_at11/118+26612104..26615596DHHC zinc finger domain containing protein, expressed
LOC_Os08g42380Os.13952.1.S1_at6/118+26617093..26618170small zinc finger, putative, expressed
LOC_Os08g42390OsAffx.29632.1.S1_at10/118+26618527..26621404glycerophosphoryl diester phosphodiesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10401.1.S1_s_at--85--7471Chr08:26593511..26593535 (25 bp)
GTGTGACGACGACTGATCTCGACGA
LOC_Os08g42350
Os.10401.1.S1_s_at--326--5791Chr08:26593491..26593515 (25 bp)
GACGACGACAGATTCTCGCTACTGA
LOC_Os08g42350
Os.10401.1.S1_s_at--534--3451Chr08:26593419..26593443 (25 bp)
CAGTGTGGATTACTACCGAACTTTA
LOC_Os08g42350
Os.10401.1.S1_s_at--433--7111Chr08:26593292..26593316 (25 bp)
GTCAGTCAGTCAGCTTTGAGTGAGT
LOC_Os08g42350
Os.10401.1.S1_s_at--220--7391Chr08:26593265..26593289 (25 bp)
GTGAGTGATCTCGACGTAGTTTGCT
LOC_Os08g42350
Os.10401.1.S1_s_at--1084--5631Chr08:26593253..26593277 (25 bp)
GACGTAGTTTGCTGGTTGGTGTAAT
LOC_Os08g42350
Os.10401.1.S1_s_at--21--2931Chr08:26593222..26593246 (25 bp)
AAGGCGATCTACTAGTAGTCTACTA
LOC_Os08g42350
Os.10401.1.S1_s_at--828--3711Chr08:26593200..26593224 (25 bp)
CTAGCTAGTACGCATGCATGTGTGT
LOC_Os08g42350
Os.10401.1.S1_s_at--556--3511Chr08:26593184..26593208 (25 bp)
CATGTGTGTGTGCTCTACTTACCGT
LOC_Os08g42350
Os.10401.1.S1_s_at--604--9891Chr08:26593169..26593193 (25 bp)
TACTTACCGTGTTGCAATCTCATCT
LOC_Os08g42350
Os.10401.1.S1_s_at--770--5191Chr08:26593156..26593180 (25 bp)
GCAATCTCATCTCTTTGTACTTACA
LOC_Os08g42350
Target Sequence 
GTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGATCGATGACG
GACAGAATTTAGCAGTGTGGATTACTACCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATGTGGTAAGAGTGTGT
CATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGT
GAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGT
ACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10401.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis