Browse Element(s) Details


OsAffx.17473.1.S1_at

Description tigr:9636.m04307
TID=OsAffx.17473.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4236011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42320Os.27249.1.S1_at11/118+26580431..26583549expressed protein
LOC_Os08g42330NANA8+26586854..26587207hypothetical protein
LOC_Os08g42340NANA8+26589773..26590264hypothetical protein
LOC_Os08g42350Os.10401.1.S1_s_at11/118+26593109..26595951MtN3/saliva family protein, expressed
LOC_Os08g42360OsAffx.17473.1.S1_at11/118+26608089..26609857hypothetical protein
LOC_Os08g42370Os.26668.1.S1_at11/118+26612104..26615596DHHC zinc finger domain containing protein, expressed
LOC_Os08g42380Os.13952.1.S1_at6/118+26617093..26618170small zinc finger, putative, expressed
LOC_Os08g42390OsAffx.29632.1.S1_at10/118+26618527..26621404glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os08g42400Os.11141.1.S1_at11/118+26633973..26637492No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17473.1.S1_at--304--3851Chr08:26609585..26609605 (21 bp)
CTGAAGCAGCTAGCGGCGAGGCCAA
LOC_Os08g42360
OsAffx.17473.1.S1_at--19--6231Chr08:26608301..26608324 (24 bp)
GAGGCCAATATATCTCGCCGGCCGC
LOC_Os08g42360
OsAffx.17473.1.S1_at--454--5151Chr08:26608275..26608299 (25 bp)
GCAACTACGAATGTCATGCGTGCAA
LOC_Os08g42360
OsAffx.17473.1.S1_at--867--611Chr08:26608260..26608284 (25 bp)
ATGCGTGCAACAACTTGCTCTGTTA
LOC_Os08g42360
OsAffx.17473.1.S1_at--1072--2511Chr08:26608249..26608273 (25 bp)
AACTTGCTCTGTTATTGCTTCTTGC
LOC_Os08g42360
OsAffx.17473.1.S1_at--379--4911Chr08:26608233..26608257 (25 bp)
GCTTCTTGCTGCAGCTTCGGTCGAC
LOC_Os08g42360
OsAffx.17473.1.S1_at--936--9411Chr08:26608217..26608241 (25 bp)
TCGGTCGACCTTCCTAAGGAGCTAA
LOC_Os08g42360
OsAffx.17473.1.S1_at--366--2351Chr08:26608194..26608218 (25 bp)
AAAGCAACTATTCATGCCTGCCTCT
LOC_Os08g42360
OsAffx.17473.1.S1_at--760--591Chr08:26608181..26608205 (25 bp)
ATGCCTGCCTCTTTTTGTTCCAGTA
LOC_Os08g42360
OsAffx.17473.1.S1_at--344--8811Chr08:26608166..26608190 (25 bp)
TGTTCCAGTACATATTCATCCCGGC
LOC_Os08g42360
OsAffx.17473.1.S1_at--552--3531Chr08:26608150..26608174 (25 bp)
CATCCCGGCCAACTTATGTTACAGA
LOC_Os08g42360
Target Sequence 
CTGAAGCAGCTAGCGGCGAGGCCAATATATCTCGCCGGCCGCCGCAACTACGAATGTCATGCGTGCAACAACTTGCTCTG
TTATTGCTTCTTGCTGCAGCTTCGGTCGACCTTCCTAAGGAGCTAAAGCAACTATTCATGCCTGCCTCTTTTTGTTCCAG
TACATATTCATCCCGGCCAACTTATGTTACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis