Browse Element(s) Details


Os.11141.1.S1_at

Description gb:AK067906.1
DB_XREF= gi:32977924
TID=Os.11141.1
CNT=37
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.11141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126H02, full insert sequence.
FL= gb:AK067906.1 gb:AK104766.1 gb:AK061543.1 gb:AK068776.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4240011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42360OsAffx.17473.1.S1_at11/118+26608089..26609857hypothetical protein
LOC_Os08g42370Os.26668.1.S1_at11/118+26612104..26615596DHHC zinc finger domain containing protein, expressed
LOC_Os08g42380Os.13952.1.S1_at6/118+26617093..26618170small zinc finger, putative, expressed
LOC_Os08g42390OsAffx.29632.1.S1_at10/118+26618527..26621404glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os08g42400Os.11141.1.S1_at11/118+26633973..26637492No apical meristem protein, expressed
LOC_Os08g42410Os.18710.1.S1_at10/118+26645139..26650451Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os08g42420Os.9624.1.S1_a_at11/118+26652840..26658222expressed protein
LOC_Os08g42430OsAffx.17475.1.S1_at10/118+26658996..26659680plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os08g42440Os.25599.1.A1_at10/118+26659995..26664271CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11141.1.S1_at--953--9331Chr08:26635012..26635035 (24 bp)
TCGCCCTGCCGATGCACAAGAAGGG
LOC_Os08g42400
Os.11141.1.S1_at--510--2951Chr08:26636815..26636839 (25 bp)
AATGGGTAGTGTGCCGGATATTTCA
LOC_Os08g42400
Os.11141.1.S1_at--235--4231Chr08:26636865..26636889 (25 bp)
CCGAGGAGGCCTGACAACGACGTGA
LOC_Os08g42400
Os.11141.1.S1_at--419--7231Chr08:26636948..26636972 (25 bp)
GTCGCAATCCAGCTGCGTCACAAGC
LOC_Os08g42400
Os.11141.1.S1_at--453--7091Chr08:26636964..26636988 (25 bp)
GTCACAAGCAGCTCCGACCAGGAAG
LOC_Os08g42400
Os.11141.1.S1_at--519--1511Chr08:26637038..26637062 (25 bp)
AGCAGCTAAGCTGCCTCTCAAAGAG
LOC_Os08g42400
Os.11141.1.S1_at--279--6211Chr08:26637062..26637086 (25 bp)
GAGGCTTGAGTGTTAGCCTAGCTAA
LOC_Os08g42400
Os.11141.1.S1_at--653--10311Chr08:26637097..26637121 (25 bp)
TTATAGCCGGCCAAACCCTCTGAAA
LOC_Os08g42400
Os.11141.1.S1_at--1107--10351Chr08:26637175..26637199 (25 bp)
TTTTTCCCAACCATGTAATGTAATG
LOC_Os08g42400
Os.11141.1.S1_at--470--7071Chr08:26637209..26637233 (25 bp)
GTAATGCAGTGTAATGTAACGGGAA
LOC_Os08g42400
Os.11141.1.S1_at--470--7051Chr08:26637224..26637248 (25 bp)
GTAACGGGAAGGAAGCACTGAATTA
LOC_Os08g42400
Target Sequence 
TCGCCCTGCCGATGCACAAGAAGGGTTGCTTGGCTGAGGCTGAAGAATGGGTAGTGTGCCGGATATTTCAGAGGAGCAGC
AGCGGCAGCCGGTCGCCGAGGAGGCCTGACAACGACGTGAGGCGAACGATGCCGGCCGTCGCCGAGCTCGGCCGGTCGCC
GTCGCCATCGTCGTCGTCGTCGCAATCCAGCTGCGTCACAAGCAGCTCCGACCAGGAAGAGGTCAGCAGCGGCTAGCTAG
CTGAAGAAGAATGCAGGCAGCAGCAGCAAGCAGCTAAGCTGCCTCTCAAAGAGAGGCTTGAGTGTTAGCCTAGCTAAGCA
TATATATTTATAGCCGGCCAAACCCTCTGAAAGTGATCTGCATCAATGCATGCCCCCCTTTAATTTCTTCTTCCTCCTTA
ATTATTTTTTCCCAACCATGTAATGTAATGTAATTTAATGTAATGCAGTGTAATGTAACGGGAAGGAAGCACTGAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis