Browse Element(s) Details


OsAffx.17475.1.S1_at

Description tigr:9636.m04317
TID=OsAffx.17475.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4243010/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42400Os.11141.1.S1_at11/118+26633973..26637492No apical meristem protein, expressed
LOC_Os08g42410Os.18710.1.S1_at10/118+26645139..26650451Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os08g42420Os.9624.1.S1_a_at11/118+26652840..26658222expressed protein
LOC_Os08g42430OsAffx.17475.1.S1_at10/118+26658996..26659680plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os08g42440Os.25599.1.A1_at10/118+26659995..26664271CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17475.1.S1_at--63--10531Chr08:26659181..26659203 (23 bp)
TTCACCCTCTTCCAAGTCTGGATTG
LOC_Os08g42430
OsAffx.17475.1.S1_at--264--1811Chr08:26659184..26659286 (25 bp)
ACCCTCTTCCAAGTCTGGATTGGCT
LOC_Os08g42430
OsAffx.17475.1.S1_at--439--9571Chr08:26659188..26659290 (25 bp)
TCTTCCAAGTCTGGATTGGCTTCGT
LOC_Os08g42430
OsAffx.17475.1.S1_at--17--4391NONE
CCAAGTCTGGATTGGCTTCGTGGCG
NONE
OsAffx.17475.1.S1_at--994--10611Chr08:26659286..26659310 (25 bp)
TTCGTGGCGGTGAACCTGGTGTGCA
LOC_Os08g42430
OsAffx.17475.1.S1_at--477--8971Chr08:26659296..26659320 (25 bp)
TGAACCTGGTGTGCACGGTGTACGC
LOC_Os08g42430
OsAffx.17475.1.S1_at--668--7491Chr08:26659363..26659387 (25 bp)
GTGGTGGCTGCACCACGCGGACGCG
LOC_Os08g42430
OsAffx.17475.1.S1_at--742--4131Chr08:26659429..26659453 (25 bp)
CGCGATCGGGTCGATCGCCATGTGG
LOC_Os08g42430
OsAffx.17475.1.S1_at--368--4711Chr08:26659470..26659494 (25 bp)
GCTGGTACGCCGTCTGCCGGTTGTA
LOC_Os08g42430
OsAffx.17475.1.S1_at--140--7151Chr08:26659481..26659505 (25 bp)
GTCTGCCGGTTGTACCGGAGGTACT
LOC_Os08g42430
OsAffx.17475.1.S1_at--345--8751Chr08:26659491..26659515 (25 bp)
TGTACCGGAGGTACTGCAACGCCGG
LOC_Os08g42430
Target Sequence 
TTCACCCTCTTCCAAGTCTGGATTGGCTTCGTGGCGGTGAACCTGGTGTGCACGGTGTACGCGGCGGCGACGGCGGCGGC
GGCGGCGAGGAAGGCGATGGGGCGGTGGTGGCTGCACCACGCGGACGCGGTGGTGGTGAACCTGGAGGCGGCGGCGACGG
CGGGCGCCGGCGCGATCGGGTCGATCGCCATGTGGGGGAACGAGGCCAGCGGCTGGTACGCCGTCTGCCGGTTGTACCGG
AGGTACTGCAACGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis