Browse Element(s) Details


Os.18710.1.S1_at

Description gb:AK071782.1
DB_XREF= gi:32981805
TID=Os.18710.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18710 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-036-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108B21, full insert sequence.
FL= gb:AK071782.1 gb:AK104686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4241010/11Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42390OsAffx.29632.1.S1_at10/118+26618527..26621404glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os08g42400Os.11141.1.S1_at11/118+26633973..26637492No apical meristem protein, expressed
LOC_Os08g42410Os.18710.1.S1_at10/118+26645139..26650451Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os08g42420Os.9624.1.S1_a_at11/118+26652840..26658222expressed protein
LOC_Os08g42430OsAffx.17475.1.S1_at10/118+26658996..26659680plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os08g42440Os.25599.1.A1_at10/118+26659995..26664271CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0010240cellular_componentpyruvate dehydrogenase complex (sensu Viridiplantae)
GO:0003863molecular_function3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
GO:0004739molecular_functionpyruvate dehydrogenase (acetyl-transferring) activity
GO:0004802molecular_functiontransketolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18710.1.S1_at--541--10771Chr08:26650017..26650041 (25 bp)
TTGAGGACATTGTTCGTGCAGCGAA
LOC_Os08g42410
Os.18710.1.S1_at--665--5051Chr08:26650070..26650094 (25 bp)
GCAGCAACAGCCTAATTCAGTGACA
LOC_Os08g42410
Os.18710.1.S1_at--566--5651Chr08:26650091..26650115 (25 bp)
GACAGTTTTTGTTTCTCCATCTTGT
LOC_Os08g42410
Os.18710.1.S1_at--23--7151Chr08:26650114..26650138 (25 bp)
GTCTTCTTCCCAATGGCCAGGAGTA
LOC_Os08g42410
Os.18710.1.S1_at--914--7111Chr08:26650158..26650182 (25 bp)
GTCTTCCCAAGTCTCAACTAGTGTA
LOC_Os08g42410
Os.18710.1.S1_at--500--2691Chr08:26650182..26650206 (25 bp)
AAGCTGATTTTGTAGATCCACCATG
LOC_Os08g42410
Os.18710.1.S1_at--963--651Chr08:26650204..26650228 (25 bp)
ATGAGGTGTCAATCCCCTTCTTTCT
LOC_Os08g42410
Os.18710.1.S1_at--648--5431Chr08:26650285..26650309 (25 bp)
GAACCATGCGACTTCTGGAGATTTT
LOC_Os08g42410
Os.18710.1.S1_at--176--10651NONE
TTCGCCCATGCCTCTGAATTGAATG
NONE
Os.18710.1.S1_at--357--5211Chr08:26650408..26650432 (25 bp)
GAATTGAATGCACTGGACTCTACAA
LOC_Os08g42410
Os.18710.1.S1_at--843--5711Chr08:26650423..26650447 (25 bp)
GACTCTACAAGTTCATGGTCCTGTT
LOC_Os08g42410
Target Sequence 
TTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAATGGCAGCAACAGCCTAATTCAGTGACAGT
TTTTGTTTCTCCATCTTGTCTTCTTCCCAATGGCCAGGAGTATGTACCACAGCATAATGGTGTCTTCCCAAGTCTCAACT
AGTGTAAGCTGATTTTGTAGATCCACCATGAGGTGTCAATCCCCTTCTTTCTTTAGTCGCAGTCGGATGGCTGCATCCGT
TCATAGTCCAAACTGAATATACACATTTGAACCATGCGACTTCTGGAGATTTTNCATGACCGGTTGATGTCAATAACATG
TATGTAATGGAGCTCCATANGTCGGCAAACCAAACCCCCATTAGATTCAATGTTTGTTCGCCCATGCCTCTGAATTGAAT
GCACTGGACTCTACAAGTTCATGGTCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis