Browse Element(s) Details


Os.26668.1.S1_at

Description gb:AK071527.1
DB_XREF= gi:32981550
TID=Os.26668.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.26668 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099O15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099O15, full insert sequence.
FL= gb:AK071527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4237011/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42330NANA8+26586854..26587207hypothetical protein
LOC_Os08g42340NANA8+26589773..26590264hypothetical protein
LOC_Os08g42350Os.10401.1.S1_s_at11/118+26593109..26595951MtN3/saliva family protein, expressed
LOC_Os08g42360OsAffx.17473.1.S1_at11/118+26608089..26609857hypothetical protein
LOC_Os08g42370Os.26668.1.S1_at11/118+26612104..26615596DHHC zinc finger domain containing protein, expressed
LOC_Os08g42380Os.13952.1.S1_at6/118+26617093..26618170small zinc finger, putative, expressed
LOC_Os08g42390OsAffx.29632.1.S1_at10/118+26618527..26621404glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os08g42400Os.11141.1.S1_at11/118+26633973..26637492No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26668.1.S1_at--1080--191Chr08:26612678..26612702 (25 bp)
ATTTCCGGGCAAGGGTCACAGTTGA
LOC_Os08g42370
Os.26668.1.S1_at--1071--9271Chr08:26612675..26612699 (25 bp)
TCCGGGCAAGGGTCACAGTTGAGCA
LOC_Os08g42370
Os.26668.1.S1_at--599--3311Chr08:26612662..26612686 (25 bp)
CACAGTTGAGCAAGGGCTACAGCAA
LOC_Os08g42370
Os.26668.1.S1_at--665--5151Chr08:26612653..26612677 (25 bp)
GCAAGGGCTACAGCAAACCCGTGTA
LOC_Os08g42370
Os.26668.1.S1_at--392--2131Chr08:26612644..26612668 (25 bp)
ACAGCAAACCCGTGTAGCATCAAGA
LOC_Os08g42370
Os.26668.1.S1_at--493--4191Chr08:26612636..26612660 (25 bp)
CCCGTGTAGCATCAAGAGGTTTTAT
LOC_Os08g42370
Os.26668.1.S1_at--21--1051Chr08:26612622..26612646 (25 bp)
AGAGGTTTTATGAGCCCCAACATGG
LOC_Os08g42370
Os.26668.1.S1_at--768--5851Chr08:26612611..26612635 (25 bp)
GAGCCCCAACATGGGCAAACCTGTT
LOC_Os08g42370
Os.26668.1.S1_at--171--2671Chr08:26612565..26612589 (25 bp)
AAGCCGGTGCCTTGGGATGAACCGA
LOC_Os08g42370
Os.26668.1.S1_at--124--391Chr08:26612526..26612550 (25 bp)
ATCAGGGACTTGGAAGCAGGTCTCG
LOC_Os08g42370
Os.26668.1.S1_at--644--9531Chr08:26612130..26612154 (25 bp)
TTTGTTGGAACAGACGTATTTTGGT
LOC_Os08g42370
Target Sequence 
ATTTCCGGGCAAGGGTCACAGTTGAGCAAGGGCTACAGCAAACCCGTGTAGCATCAAGAGGTTTTATGAGCCCCAACATG
GGCAAACCTGTTGGGGATCTTGAAATGGGCAGGAAGCCGGTGCCTTGGGATGAACCGAGGACAGCAGCTGATATCAGGGA
CTTGGAAGCAGGTCTCGGGGGCTTTTTGGATGAGAAAGAGGGTAGACTAACGCATGCATCCCCAGATNTGAGCAGGGACG
NCCTTCCAGCTGATCTCATGAAAGGACGAGCTGGCACACATTCAAGGCGGTCAAGTTGGGTTAATAGAACTGGAACTTCA
GAATCAGAGTGACCCNTGTGCATTGAACTACCATGAAGTACAATTTGTTTACCATGTGCGCCAGGGTAAAGGTCCTGGAT
CATCTGTGTAATTCCAAACACGCTTCCTGTTGCTTTGTCTTTGGTAGTGCATGATATCACACGAAGCTTCCATGCGCTGT
ATGTGTGTCTGGTGTTTTAAGAAAAGTAGCCCAAGAGCTTCCGGTTTGGATGGGGTATCTGTATATATATTTGTTGGAAC
AGACGTATTTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis