Browse Element(s) Details


OsAffx.17471.3.S1_s_at

Description tigr:9636.m04300
TID=OsAffx.17471.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F15I1.20
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g422109/11cation exchanger, putative
LOC_Os02g203307/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42150NANA8+26507630..26508224hypothetical protein
LOC_Os08g42160NANA8+26508920..26512903retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g42170NANA8+26513991..26514314Zinc transporter 2 precursor, putative
LOC_Os08g42180NANA8+26515000..26515683hypothetical protein
LOC_Os08g42189Os.8731.2.S1_s_at11/118+26519312..26522945HEAT repeat family protein, expressed
LOC_Os08g42198OsAffx.17472.1.S1_at11/118+26523376..26523997Auxin responsive protein, expressed
LOC_Os08g42210OsAffx.17471.1.S1_at11/118+26524273..26531101cation exchanger, putative
LOC_Os08g42210OsAffx.17471.3.S1_s_at9/118+26524273..26531101cation exchanger, putative
LOC_Os08g42210Os.52313.1.S1_x_at7/118+26524273..26531101cation exchanger, putative
LOC_Os08g42210OsAffx.17471.2.S1_at7/118+26524273..26531101cation exchanger, putative
LOC_Os08g42210Os.52313.1.S1_at4/118+26524273..26531101cation exchanger, putative
LOC_Os08g42220OsAffx.12130.1.S1_at11/118+26532138..26535329hypothetical protein
LOC_Os08g42230Os.10827.1.S1_x_at11/118+26535995..26539282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42230Os.46055.2.S1_x_at6/118+26535995..26539282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42240NANA8+26539843..26540422hypothetical protein
LOC_Os08g42250OsAffx.25936.1.S1_s_at11/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.7.S1_s_at11/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.1.S1_at7/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.2.S1_x_at4/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.5.S1_x_at3/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42259OsAffx.29629.1.S1_at11/118+26551973..26553999hypothetical protein
LOC_Os08g42268Os.8731.2.S1_s_at11/118+26555144..26561260HEAT repeat family protein, expressed
LOC_Os08g42268OsAffx.19018.1.S1_x_at1/118+26555144..26561260HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17471.3.S1_s_at--658--8213Chr08:26562960..26562983 (24 bp)
GGAATCTGCCTTTTCATTTCTGTCA
NONE
OsAffx.17471.3.S1_s_at--517--10553Chr08:26562971..26562995 (25 bp)
TTCATTTCTGTCAGCTTGCATCGAG
NONE
OsAffx.17471.3.S1_s_at--321--1553Chr08:26562983..26563007 (25 bp)
AGCTTGCATCGAGATCTGTCTGAAG
NONE
OsAffx.17471.3.S1_s_at--1021--4973Chr08:26562988..26563012 (25 bp)
GCATCGAGATCTGTCTGAAGGATTC
NONE
OsAffx.17471.3.S1_s_at--291--8993Chr08:26563003..26563027 (25 bp)
TGAAGGATTCAGAGAACGGCACATC
NONE
OsAffx.17471.3.S1_s_at--347--5973Chr08:26563014..26563038 (25 bp)
GAGAACGGCACATCGACATCCTAAA
NONE
OsAffx.17471.3.S1_s_at--436--5553Chr08:26563028..26563052 (25 bp)
GACATCCTAAATCTGCCCAAGGGTT
NONE
OsAffx.17471.3.S1_s_at--407--3812Chr08:26563040..26563064 (25 bp)
CTGCCCAAGGGTTTAACACCTAGAT
NONE
OsAffx.17471.3.S1_s_at--283--2172Chr08:26563055..26563079 (25 bp)
ACACCTAGATCAGTGCATGTCTTAA
NONE
OsAffx.17471.3.S1_s_at--262--1131NONE
AGTGCATGTCTTAATCCTTTGGCCT
NONE
OsAffx.17471.3.S1_s_at--144--9551NONE
TCTTAATCCTTTGGCCTCGTTTTCT
NONE
Target Sequence 
GGAATCTGCCTTTTCATTTCTGTCAGCTTGCATCGAGATCTGTCTGAAGGATTCAGAGAACGGCACATCGACATCCTAAA
TCTGCCCAAGGGTTTAACACCTAGATCAGTGCATGTCTTAATCCTTTGGCCTCGTTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17471.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis