Browse Element(s) Details


Os.35591.1.S1_a_at

Description gb:AK066730.1
DB_XREF= gi:32976748
TID=Os.35591.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075C07, full insert sequence.
FL= gb:AK066730.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2028010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20250Os.53142.1.S1_at3/112+11922454..11926516retrotransposon protein, putative, unclassified
LOC_Os02g20250OsAffx.22492.1.S1_x_at1/112+11922454..11926516retrotransposon protein, putative, unclassified
LOC_Os02g20250OsAffx.22492.1.S1_at1/112+11922454..11926516retrotransposon protein, putative, unclassified
LOC_Os02g20260Os.31312.2.S1_x_at4/112+11927142..11930326retrotransposon protein, putative, unclassified
LOC_Os02g20260Os.31312.5.S1_x_at4/112+11927142..11930326retrotransposon protein, putative, unclassified
LOC_Os02g20270Os.18239.1.S1_at10/112+11935197..11941762expressed protein
LOC_Os02g20280Os.35591.1.S1_a_at10/112+11944393..11949977expressed protein
LOC_Os02g20280OsAffx.19018.1.S1_x_at1/112+11944393..11949977expressed protein
LOC_Os02g20290OsAffx.12130.1.S1_at11/112+11950752..11953945hypothetical protein
LOC_Os02g20300OsAffx.29629.1.S1_at11/112+11958562..11960588hypothetical protein
LOC_Os02g20310Os.8731.2.S1_s_at11/112+11961692..11967963HEAT repeat family protein, expressed
LOC_Os02g20320OsAffx.17472.1.S1_at5/112+11968301..11968732Auxin responsive protein
LOC_Os02g20330OsAffx.17471.1.S1_at11/112+11969198..11976032hypothetical protein
LOC_Os02g20330OsAffx.17471.3.S1_s_at7/112+11969198..11976032hypothetical protein
LOC_Os02g20330Os.52313.1.S1_x_at7/112+11969198..11976032hypothetical protein
LOC_Os02g20330OsAffx.17471.2.S1_at7/112+11969198..11976032hypothetical protein
LOC_Os02g20330Os.52313.1.S1_at4/112+11969198..11976032hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35591.1.S1_a_at--565--3891NONE
CTGGGACTTCACCTGTGACTTTGAA
NONE
Os.35591.1.S1_a_at--168--6893Chr08:26531094..26531118 (25 bp)
GTATCTAGCTAGTTTTACTCCCCTG
NONE
Os.35591.1.S1_a_at--1093--10453Chr08:26531108..26531132 (25 bp)
TTACTCCCCTGTATCTTAGAAAAAT
NONE
Os.35591.1.S1_a_at--1126--6793Chr08:26531133..26531157 (25 bp)
GTTTTACAACACCTTTGAGCATTCA
NONE
Os.35591.1.S1_a_at--201--4953Chr08:26531151..26531175 (25 bp)
GCATTCATACCTTCTTTTATATCAT
NONE
Os.35591.1.S1_a_at--755--10113Chr08:26531178..26531202 (25 bp)
TATGTGTGTTCTTCGTTTCTTAGGC
NONE
Os.35591.1.S1_a_at--157--7413Chr08:26531183..26531207 (25 bp)
GTGTTCTTCGTTTCTTAGGCCAGAA
NONE
Os.35591.1.S1_a_at--327--5393Chr08:26531220..26531244 (25 bp)
GAAGCAGCTGTTGTAATTCCAGATT
NONE
Os.35591.1.S1_a_at--204--53Chr08:26531235..26531259 (25 bp)
ATTCCAGATTTCTTGAATCTTGGTA
NONE
Os.35591.1.S1_a_at--862--413Chr08:26531251..26531275 (25 bp)
ATCTTGGTATGGGATTTGCCTCTCA
NONE
Os.35591.1.S1_a_at--765--10113Chr08:26531258..26531282 (25 bp)
TATGGGATTTGCCTCTCAAGAGTAA
NONE
Target Sequence 
CTGGGACTTCACCTGTGACTTTGAAATTGATTATGGATCCGAGGAACGCGCATCCATAGTTTACAAAACGCTAGCTGTTG
ATAAGGAGTTGCAACCTGACAAGGTAAAGAGGGAGATGTCTGTTTCTGGTGGCAAGCTCGTCGTGCACTTTGAAGCTGTA
GAGGCTCGGTTCCTGCGAGCATCGTTCAGCGCGTTCGTCGATCTTACAGTACTGGTTACCAAGCTTGTTGAAGAATATGG
CATCAGCAAGGAAGGAGAAGGCAGTATCTAGCTAGTTTTACTCCCCTGTATCTTAGAAAAATGTTTTACAACACCTTTGA
GCATTCATACCTTCTTTTATATCATATTATGTGTGTTCTTCGTTTCTTAGGCCAGAAATCTACAAGATAGAAGCAGCTGT
TGTAATTCCAGATTTCTTGAATCTTGGTATGGGATTTGCCTCTCAAGAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35591.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis