Browse Element(s) Details


OsAffx.24416.1.S1_x_at

Description tigr:9630.m02357
TID=OsAffx.24416.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2520011/11expressed protein
LOC_Os01g309901/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25170NANA2+14627902..14635780retrotransposon protein, putative, unclassified
LOC_Os02g25180Os.45173.1.S1_x_at1/112+14638828..14645653retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g25190OsAffx.2741.1.S1_at11/112+14650212..14651359hypothetical protein
LOC_Os02g25200OsAffx.24416.1.S1_x_at11/112+14652906..14653725expressed protein
LOC_Os02g25200OsAffx.24416.1.S1_at11/112+14652906..14653725expressed protein
LOC_Os02g25210OsAffx.19946.1.S1_at11/112+14655721..14656800hypothetical protein
LOC_Os02g25220OsAffx.12186.1.S1_at11/112+14659161..14662082hypothetical protein
LOC_Os02g25230Os.50613.1.S1_at11/112+14675186..14678936calcium channel isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24416.1.S1_x_at--1046--2351Chr02:14652976..14653000 (25 bp)
AAAGCTGTGGCACGTATACCATCAA
LOC_Os02g25200
OsAffx.24416.1.S1_x_at--534--311Chr02:14652991..14653325 (25 bp)
ATACCATCAAAGGAACATTGTTGCT
LOC_Os02g25200
OsAffx.24416.1.S1_x_at--285--5491Chr02:14653315..14653337 (23 bp)
GAACATTGTTGCTAGAGGAGCACCC
LOC_Os02g25200
OsAffx.24416.1.S1_x_at--730--51Chr02:14653317..14653341 (25 bp)
ATTGTTGCTAGAGGAGCACCCGTCT
LOC_Os02g25200
OsAffx.24416.1.S1_x_at--351--971Chr02:14653328..14653352 (25 bp)
AGGAGCACCCGTCTCAAAGACAGTC
LOC_Os02g25200
OsAffx.24416.1.S1_x_at--211--5091Chr02:14653332..14653356 (25 bp)
GCACCCGTCTCAAAGACAGTCAGAT
LOC_Os02g25200
OsAffx.24416.1.S1_x_at--275--2331Chr02:14653343..14653367 (25 bp)
AAAGACAGTCAGATGTCAACGATCT
LOC_Os02g25200
OsAffx.24416.1.S1_x_at--314--1312Chr02:14653353..14653377 (25 bp)
AGATGTCAACGATCTGATTGAGAAG
LOC_Os02g25200
OsAffx.24416.1.S1_x_at--920--5511Chr02:14653452..14653476 (25 bp)
GAAAATGCCAGCCACTCAGTTGGAT
LOC_Os02g25200
OsAffx.24416.1.S1_x_at--423--1031Chr02:14653559..14653583 (25 bp)
AGGTCTGTGGCAATAACGGTCACTC
LOC_Os02g25200
OsAffx.24416.1.S1_x_at--117--7531Chr02:14653565..14653589 (25 bp)
GTGGCAATAACGGTCACTCTGGGAC
LOC_Os02g25200
Target Sequence 
AAAGCTGTGGCACGTATACCATCAAAGGAACATTGTTGCTAGAGGAGCACCCGTCTCAAAGACAGTCAGATGTCAACGAT
CTGATTGAGAAGAGGTTCCCAAATATGGGTTGGAGCGAGGAACGACTCCAAACCCGTCAACGCGGCATGTACACCGTCGA
GGGGACGAAAATGCCAGCCACTCAGTTGGATCTCCTTATGAAGAGACTGGACAACAATGAGAAGGACGCCGAGCAGGGTA
CCGTTAAGGCCCTGGACTCTCACATGACATGTGAGGTCTGTGGCAATAACGGTCACTCTGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24416.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis