Browse Element(s) Details


OsAffx.24446.1.S1_at

Description tigr:9630.m02571
TID=OsAffx.24446.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2713010/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27110Os.25005.1.A1_at11/112+15925428..15944630expressed protein
LOC_Os02g27120NANA2+15944956..15946386retrotransposon protein, putative, LINE subclass
LOC_Os02g27130OsAffx.24446.1.S1_at10/112+15951144..15971311C2 domain-containing protein, putative, expressed
LOC_Os02g27130OsAffx.4419.1.S1_at1/112+15951144..15971311C2 domain-containing protein, putative, expressed
LOC_Os02g27140OsAffx.24447.1.S1_at11/112+15972844..15974179hypothetical protein
LOC_Os02g27150OsAffx.12219.1.S1_at11/112+15975786..15976337hypothetical protein
LOC_Os02g27160NANA2+15981181..15984321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g27170OsAffx.24448.1.S1_at11/112+15987487..15988863hypothetical protein
LOC_Os02g27180NANA2+15989770..15990517hypothetical protein
LOC_Os02g27190NANA2+15994843..15995706hypothetical protein
LOC_Os02g27200Os.27363.1.S1_at11/112+15996166..15999155FAD binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24446.1.S1_at--904--7491Chr02:15971248..15971272 (25 bp)
GTGGTGTACGCGACAGTGATCTCAT
LOC_Os02g27130
OsAffx.24446.1.S1_at--380--8871Chr02:15971195..15971219 (25 bp)
TGAGGTCCCAATCTGCCTTGGCTTA
LOC_Os02g27130
OsAffx.24446.1.S1_at--279--10871Chr02:15971178..15971202 (25 bp)
TTGGCTTACGCACCTACATTGTTCA
LOC_Os02g27130
OsAffx.24446.1.S1_at--881--2011Chr02:15971152..15971176 (25 bp)
ACTACACTCGTCTCCAAGATAACTT
LOC_Os02g27130
OsAffx.24446.1.S1_at--394--6471Chr02:15971135..15971159 (25 bp)
GATAACTTTGCATAGCCTCCAAGGC
LOC_Os02g27130
OsAffx.24446.1.S1_at--365--571Chr02:15971082..15971106 (25 bp)
ATCCATCGCGAATCCTACAAGTGAG
LOC_Os02g27130
OsAffx.24446.1.S1_at--1047--4571Chr02:15971058..15971082 (25 bp)
GCGAGGAACCGGACTATTACGACTA
LOC_Os02g27130
OsAffx.24446.1.S1_at--46--4751NONE
GCTGATATGGTGCTGTATTTGCTTC
NONE
OsAffx.24446.1.S1_at--961--1071Chr02:15968328..15968352 (25 bp)
AGGGCTCTCTGTTGAAACACTCCGG
LOC_Os02g27130
OsAffx.24446.1.S1_at--958--10011Chr02:15967698..15967722 (25 bp)
TAGACTGTAGTTCTGGTTATGCCAC
LOC_Os02g27130
OsAffx.24446.1.S1_at--1108--8211Chr02:15967499..15967523 (25 bp)
GGAATTGCCAGTCAGTTCACATGAA
LOC_Os02g27130
Target Sequence 
GTGGTGTACGCGACAGTGATCTCATATGTGATTCATGACAACAACCTCTTTGGTGAGGTCCCAATCTGCCTTGGCTTACG
CACCTACATTGTTCACACTACACTCGTCTCCAAGATAACTTTGCATAGCCTCCAAGGCTTCTCTCCTTGCCACTTCCATG
AGCTTCATCCATCGCGAATCCTACAAGTGAGCGAGGAACCGGACTATTACGACTACGTGATAAATTGTTTTAAAAATGCT
GATATGGTGCTGTATTTGCTTCGCAAGTATTTGGGCGAATATGTTGAAGGGCTCTCTGTTGAAACACTCCGGATAAGTGT
TTGGCAAGTAGACTGTAGTTCTGGTTATGCCACAATGACATGGAGGAATTGCCAGTCAGTTCACATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis