Browse Element(s) Details


OsAffx.24456.1.S1_x_at

Description tigr:9630.m02608
TID=OsAffx.24456.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=importin (nuclear transport factor ) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2747011/11Importin-7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27450OsAffx.32146.1.S1_at11/112+16177731..16178943hypothetical protein
LOC_Os02g27460NANA2+16189556..16191285transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g27470OsAffx.24456.1.S1_x_at11/112+16202479..16210108Importin-7, putative, expressed
LOC_Os02g27470Os.26641.1.S1_at11/112+16202479..16210108Importin-7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24456.1.S1_x_at--600--7671Chr02:16208601..16208625 (25 bp)
GGGTTGACCTCACTTATTAGCCTTC
LOC_Os02g27470
OsAffx.24456.1.S1_x_at--117--2191Chr02:16208673..16208697 (25 bp)
ACACTTGATCTGCTTGTTGCCTACA
LOC_Os02g27470
OsAffx.24456.1.S1_x_at--204--151Chr02:16208996..16209256 (25 bp)
ATTAGCTGCTGAGGCCAGAGGCTTC
LOC_Os02g27470
OsAffx.24456.1.S1_x_at--314--6211Chr02:16209249..16209273 (25 bp)
GAGGCTTCCAGCCAGCTGATGAGTA
LOC_Os02g27470
OsAffx.24456.1.S1_x_at--117--8891Chr02:16209328..16209352 (25 bp)
TGAGGTTGACCCGTTCATTTTGTTT
LOC_Os02g27470
OsAffx.24456.1.S1_x_at--740--10791Chr02:16209351..16209458 (25 bp)
TTGTTGAAACTGTCCAAGGCTTGCA
LOC_Os02g27470
OsAffx.24456.1.S1_x_at--721--8291Chr02:16209451..16209475 (25 bp)
GGCTTGCAAGCATCTGATCCTATCA
LOC_Os02g27470
OsAffx.24456.1.S1_x_at--484--6371Chr02:16209466..16209490 (25 bp)
GATCCTATCAGGTTCCAGAGCCTCA
LOC_Os02g27470
OsAffx.24456.1.S1_x_at--569--5871Chr02:16209483..16209507 (25 bp)
GAGCCTCATGCAAACTCTTGATTTT
LOC_Os02g27470
OsAffx.24456.1.S1_x_at--476--10771Chr02:16209500..16209524 (25 bp)
TTGATTTTCGTTATCAGGCCCTTGC
LOC_Os02g27470
OsAffx.24456.1.S1_x_at--864--891Chr02:16209515..16209539 (25 bp)
AGGCCCTTGCTAGTGGCATAGCTCA
LOC_Os02g27470
Target Sequence 
GGGTTGACCTCACTTATTAGCCTTCCAGCAGATCATATTCCAGGAGAAGCCCTGAATCGTATTTTCAAAGCAACACTTGA
TCTGCTTGTTGCCTACAAAGAGCAAGTGGCAGAATCTAAGAAACAAGATGATGCTGATGGTGATGATATGGATGGTTTTG
ATGCTGATGAAGATGAAGATGATGATGAGGTTGAATCTGATAAGGAGATGGGACTTGATGAAGAAGATGCTGATGAAGTA
AACAGTCTTCATCTTCAGAAATTAGCTGCTGAGGCCAGAGGCTTCCAGCCAGCTGATGAGTATGATGACTCTGATGACGA
TTTCAGTGATGATGAGGAGCTGCAATCACCAATAGATGAGGTTGACCCGTTCATTTTGTTTGTTGAAACTGTCCAAGGCT
TGCAAGCATCTGATCCTATCAGGTTCCAGAGCCTCATGCAAACTCTTGATTTTCGTTATCAGGCCCTTGCTAGTGGCATA
GCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24456.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis