Browse Element(s) Details


OsAffx.24469.1.S1_at

Description tigr:9637.m01208
TID=OsAffx.24469.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1489011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14860OsAffx.6276.1.S1_at10/119+8863337..8866726hypothetical protein
LOC_Os09g14870OsAffx.18887.1.S1_at3/119+8867795..8872867hypothetical protein
LOC_Os09g14870OsAffx.19675.1.S1_at3/119+8867795..8872867hypothetical protein
LOC_Os09g14870OsAffx.19675.1.S1_x_at3/119+8867795..8872867hypothetical protein
LOC_Os09g14880Os.53978.1.S1_at11/119+8878453..8882844transposon protein, putative, Pong sub-class, expressed
LOC_Os09g14890OsAffx.24469.1.S1_x_at11/119+8888532..8889134hypothetical protein
LOC_Os09g14890OsAffx.24469.1.S1_at11/119+8888532..8889134hypothetical protein
LOC_Os09g14900Os.46012.3.S1_x_at5/119+8898671..8903527retrotransposon protein, putative, unclassified
LOC_Os09g14900Os.27088.1.A1_x_at2/119+8898671..8903527retrotransposon protein, putative, unclassified
LOC_Os09g14900Os.46012.2.S1_x_at2/119+8898671..8903527retrotransposon protein, putative, unclassified
LOC_Os09g14900Os.43516.1.S1_at1/119+8898671..8903527retrotransposon protein, putative, unclassified
LOC_Os09g14910OsAffx.17702.1.S1_at11/119+8910418..8910958hypothetical protein
LOC_Os09g14920OsAffx.17703.1.S1_at11/119+8912627..8915023hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24469.1.S1_at--360--9731Chr09:8888619..8888643 (25 bp)
TCAATTTTCTCGGAGAATGGAGAAG
LOC_Os09g14890
OsAffx.24469.1.S1_at--708--8071Chr09:8888587..8888611 (25 bp)
GGAGCGGTTCATGGGTAGGGTTTTG
LOC_Os09g14890
OsAffx.24469.1.S1_at--236--10531Chr09:8888580..8888604 (25 bp)
TTCATGGGTAGGGTTTTGCGGTGCT
LOC_Os09g14890
OsAffx.24469.1.S1_at--293--6791Chr09:8888568..8888592 (25 bp)
GTTTTGCGGTGCTATTTGGGCCAAC
LOC_Os09g14890
OsAffx.24469.1.S1_at--569--10391Chr09:8888567..8888591 (25 bp)
TTTTGCGGTGCTATTTGGGCCAACT
LOC_Os09g14890
OsAffx.24469.1.S1_at--226--10252Chr02:4235090..4235109 (20 bp)
TTTGCGGTGCTATTTGGGCCAACTT
NONE
OsAffx.24469.1.S1_at--265--10711Chr09:8888565..8888589 (25 bp)
TTGCGGTGCTATTTGGGCCAACTTT
LOC_Os09g14890
OsAffx.24469.1.S1_at--689--9131Chr09:8888564..8888588 (25 bp)
TGCGGTGCTATTTGGGCCAACTTTC
LOC_Os09g14890
OsAffx.24469.1.S1_at--636--4671Chr09:8888563..8888587 (25 bp)
GCGGTGCTATTTGGGCCAACTTTCT
LOC_Os09g14890
OsAffx.24469.1.S1_at--373--9072Chr08:19224517..19224541 (25 bp)
TGCTATTTGGGCCAACTTTCTACTG
NONE
OsAffx.24469.1.S1_at--699--4872Chr08:19224518..19224542 (25 bp)
GCTATTTGGGCCAACTTTCTACTGG
NONE
Target Sequence 
TCAATTTTCTCGGAGAATGGAGAAGAGAAGGGGGAGCGGTTCATGGGTAGGGTTTTGCGGTGCTATTTGGGCCAACTTTC
TACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis