Browse Element(s) Details


OsAffx.24469.1.S1_x_at

Description tigr:9637.m01208
TID=OsAffx.24469.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1489011/11hypothetical protein
LOC_Os08g068602/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g368401/11hypothetical protein
LOC_Os08g146501/11hypothetical protein
LOC_Os05g135301/11hypothetical protein
LOC_Os02g279101/11hypothetical protein
LOC_Os04g216101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14860OsAffx.6276.1.S1_at10/119+8863337..8866726hypothetical protein
LOC_Os09g14870OsAffx.18887.1.S1_at3/119+8867795..8872867hypothetical protein
LOC_Os09g14870OsAffx.19675.1.S1_at3/119+8867795..8872867hypothetical protein
LOC_Os09g14870OsAffx.19675.1.S1_x_at3/119+8867795..8872867hypothetical protein
LOC_Os09g14880Os.53978.1.S1_at11/119+8878453..8882844transposon protein, putative, Pong sub-class, expressed
LOC_Os09g14890OsAffx.24469.1.S1_x_at11/119+8888532..8889134hypothetical protein
LOC_Os09g14890OsAffx.24469.1.S1_at11/119+8888532..8889134hypothetical protein
LOC_Os09g14900Os.46012.3.S1_x_at5/119+8898671..8903527retrotransposon protein, putative, unclassified
LOC_Os09g14900Os.27088.1.A1_x_at2/119+8898671..8903527retrotransposon protein, putative, unclassified
LOC_Os09g14900Os.46012.2.S1_x_at2/119+8898671..8903527retrotransposon protein, putative, unclassified
LOC_Os09g14900Os.43516.1.S1_at1/119+8898671..8903527retrotransposon protein, putative, unclassified
LOC_Os09g14910OsAffx.17702.1.S1_at11/119+8910418..8910958hypothetical protein
LOC_Os09g14920OsAffx.17703.1.S1_at11/119+8912627..8915023hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24469.1.S1_x_at--167--8678Chr09:21246000..21246024 (25 bp)
TGTGGTTCTCCATGGAGGAGAGCTC
LOC_Os09g36840
OsAffx.24469.1.S1_x_at--122--5139Chr08:3822972..3822994 (23 bp)
GCACAATGTCAATTTTCTCGGAGAA
LOC_Os08g06860
OsAffx.24469.1.S1_x_at--464--3192Chr08:3822975..3822994 (20 bp)
CAATGTCAATTTTCTCGGAGAATGG
LOC_Os08g06860
OsAffx.24469.1.S1_x_at--361--9731Chr09:8888619..8888643 (25 bp)
TCAATTTTCTCGGAGAATGGAGAAG
LOC_Os09g14890
OsAffx.24469.1.S1_x_at--478--1331Chr09:8888585..8888609 (25 bp)
AGCGGTTCATGGGTAGGGTTTTGCG
LOC_Os09g14890
OsAffx.24469.1.S1_x_at--292--6791Chr09:8888568..8888592 (25 bp)
GTTTTGCGGTGCTATTTGGGCCAAC
LOC_Os09g14890
OsAffx.24469.1.S1_x_at--227--10252Chr02:4235090..4235109 (20 bp)
TTTGCGGTGCTATTTGGGCCAACTT
NONE
OsAffx.24469.1.S1_x_at--264--10711Chr09:8888565..8888589 (25 bp)
TTGCGGTGCTATTTGGGCCAACTTT
LOC_Os09g14890
OsAffx.24469.1.S1_x_at--637--4671Chr09:8888563..8888587 (25 bp)
GCGGTGCTATTTGGGCCAACTTTCT
LOC_Os09g14890
OsAffx.24469.1.S1_x_at--372--9072Chr08:19224517..19224541 (25 bp)
TGCTATTTGGGCCAACTTTCTACTG
NONE
OsAffx.24469.1.S1_x_at--700--4872Chr08:19224518..19224542 (25 bp)
GCTATTTGGGCCAACTTTCTACTGG
NONE
Target Sequence 
TGTGGTTCTCCATGGAGGAGAGCTCNCGCGAAGGCNGATGGTGGCCGCCNGCGAGAGCTGATGGTGATGGAGGGAGGAAG
AAGATGAGAGGAGGNNNNGCACAATGTCAATTTTCTCGGAGAATGGAGAAGAGAAGGGGGAGCGGTTCATGGGTAGGGTT
TTGCGGTGCTATTTGGGCCAACTTTCTACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24469.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis