Browse Element(s) Details


OsAffx.24478.1.S1_at

Description tigr:9630.m02717
TID=OsAffx.24478.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g285309/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28500Os.52238.1.S1_at2/112+16848626..16854965retrotransposon, putative, centromere-specific
LOC_Os02g28510NANA2+16857097..16858879retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28520NANA2+16869277..16873512retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g28530OsAffx.24478.1.S1_at9/112+16875571..16877824hypothetical protein
LOC_Os02g28540NANA2+16880641..16882725retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28550NANA2+16883301..16887117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28560OsAffx.24479.1.S1_at9/112+16897994..16899026hypothetical protein
LOC_Os02g28570OsAffx.2778.1.S1_at11/112+16901844..16906742hypothetical protein
LOC_Os02g28570OsAffx.15255.1.S1_x_at1/112+16901844..16906742hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24478.1.S1_at--1017--8151Chr02:16877773..16877793 (21 bp)
GGAACCCTTGGCTCCGAACAACACA
LOC_Os02g28530
OsAffx.24478.1.S1_at--508--8311NONE
GGCTCCGAACAACACATACGCATTT
NONE
OsAffx.24478.1.S1_at--807--2451Chr02:16876775..16876799 (25 bp)
AACAAGGTATCCCTCTTAGTGCAGG
LOC_Os02g28530
OsAffx.24478.1.S1_at--117--10151NONE
TATCCCTCTTAGTGCAGGAGCTTTT
NONE
OsAffx.24478.1.S1_at--318--2931Chr02:16875866..16876024 (25 bp)
AAGGACGGGAATTAGCTCGTCGAAT
LOC_Os02g28530
OsAffx.24478.1.S1_at--282--3791Chr02:16875851..16875875 (25 bp)
CTCGTCGAATATTTTGTGGAGTCCA
LOC_Os02g28530
OsAffx.24478.1.S1_at--638--1091Chr02:16875812..16875836 (25 bp)
AGTGGCCTGGTCAATCAAGCTCTAG
LOC_Os02g28530
OsAffx.24478.1.S1_at--297--3911Chr02:16875806..16875830 (25 bp)
CTGGTCAATCAAGCTCTAGCTGCAG
LOC_Os02g28530
OsAffx.24478.1.S1_at--144--6091Chr02:16875777..16875801 (25 bp)
GAGGGCATTCCTCTCGGTATAGATG
LOC_Os02g28530
OsAffx.24478.1.S1_at--886--4931Chr02:16875773..16875797 (25 bp)
GCATTCCTCTCGGTATAGATGGCCA
LOC_Os02g28530
OsAffx.24478.1.S1_at--900--3915Chr11:3679709..3679729 (21 bp)
CTGGCCCATGGCACGGCATTTTGGC
NONE
Target Sequence
GGAACCCTTGGCTCCGAACAACACATACGCATTTCATCGAGCACGTCTTGAGCGTTCTAGATTTCTTGAGTGCTCTATAT
TGTGGTCAGATCAACAAGGTATCCCTCTTAGTGCAGGAGCTTTTGGTTATTGATGATTTGTTATCAGCTCTTGTGGGTAT
TGAGGGACGTTACATTTCGAATAAGAGAGGTACGGGGAAAGGACGGGAATTAGCTCGTCGAATATTTTGTGGAGTCCAGA
TCGCATTTCAAGAGTGGCCTGGTCAATCAAGCTCTAGCTGCAGCATTGAGGGCATTCCTCTCGGTATAGATGGCCAAAAG
TCCCGAGGCCCGACAGCCTGGCCCATGGCACGGCATTTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis