Browse Element(s) Details


OsAffx.24558.1.S1_at

Description tigr:9630.m03200
TID=OsAffx.24558.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3369011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33680NANA2+20076291..20077808U-box domain containing protein, expressed
LOC_Os02g33690OsAffx.24558.1.S1_at11/112+20084348..20084722hypothetical protein
LOC_Os02g33700OsAffx.12337.1.S1_at10/112+20096900..20098594hypothetical protein
LOC_Os02g33700Os.55134.1.S1_at3/112+20096900..20098594hypothetical protein
LOC_Os02g33700Os.55296.1.S1_x_at2/112+20096900..20098594hypothetical protein
LOC_Os02g33710Os.18672.1.S1_s_at6/112+20103243..20106357Histidine decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24558.1.S1_at--359--1491Chr02:20084662..20084686 (25 bp)
AGCAACGCAGCAAGTAGAGCGGAGC
LOC_Os02g33690
OsAffx.24558.1.S1_at--90--4711Chr02:20084639..20084663 (25 bp)
GCGGCGGCAGGCATGCTCTGAGCAA
LOC_Os02g33690
OsAffx.24558.1.S1_at--703--5951Chr02:20084620..20084644 (25 bp)
GAGCAAGGAGCAGCAAAGCAGGCAA
LOC_Os02g33690
OsAffx.24558.1.S1_at--997--2711Chr02:20084572..20084596 (25 bp)
AAGCAGTGCGGGTGCCGACAGCCCC
LOC_Os02g33690
OsAffx.24558.1.S1_at--113--5651Chr02:20084556..20084580 (25 bp)
GACAGCCCCAATCTGAATGGTGCGT
LOC_Os02g33690
OsAffx.24558.1.S1_at--42--8611Chr02:20084539..20084563 (25 bp)
TGGTGCGTGGCAAATCAATGTAGGA
LOC_Os02g33690
OsAffx.24558.1.S1_at--178--3091Chr02:20084527..20084551 (25 bp)
AATCAATGTAGGAGGCCGCCAGCTC
LOC_Os02g33690
OsAffx.24558.1.S1_at--52--1951Chr02:20084498..20084522 (25 bp)
ACGGCGACGCGGACCGACGGATCAT
LOC_Os02g33690
OsAffx.24558.1.S1_at--885--10691Chr02:20084427..20084451 (25 bp)
TTGCCGGTGCGGCAAGCCTCCATCA
LOC_Os02g33690
OsAffx.24558.1.S1_at--239--5171Chr02:20084416..20084440 (25 bp)
GCAAGCCTCCATCACGTCGATTTGG
LOC_Os02g33690
OsAffx.24558.1.S1_at--1125--8531Chr02:20084394..20084418 (25 bp)
TGGAGTTGAGGGTGTCCCTCTTCAT
LOC_Os02g33690
Target Sequence 
AGCAACGCAGCAAGTAGAGCGGAGCGGCGGCAGGCATGCTCTGAGCAAGGAGCAGCAAAGCAGGCAAGAAGACTGGAGCG
GCGGTGGGCGAAGCAGTGCGGGTGCCGACAGCCCCAATCTGAATGGTGCGTGGCAAATCAATGTAGGAGGCCGCCAGCTC
CCCAACGGCGACGCGGACCGACGGATCATGGGAGTGGAGGCAGCGGTGATGGTGGTGGTCAAGAAACCGGAGGGGTTGCC
GGTGCGGCAAGCCTCCATCACGTCGATTTGGAGTTGAGGGTGTCCCTCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis