Browse Element(s) Details


OsAffx.24598.1.S1_at

Description tigr:9630.m03478
TID=OsAffx.24598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3643011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36390Os.23556.1.S1_at11/112+21974196..21980638nucleotide-sugar transporter family protein, putative, expressed
LOC_Os02g36400OsAffx.24597.1.S1_at11/112+21981288..21985477Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed
LOC_Os02g36414Os.50119.1.S1_at11/112+21989655..21996650Sugar transporter family protein, expressed
LOC_Os02g36430OsAffx.24598.1.S1_at11/112+21999875..22000123hypothetical protein
LOC_Os02g36440Os.53709.1.S1_at11/112+22001604..22006231Sugar transporter family protein, expressed
LOC_Os02g36450Os.27080.1.S1_at11/112+22007420..22011776Sugar transporter family protein, expressed
LOC_Os02g36460OsAffx.12373.1.S1_at11/112+22014757..22015109hypothetical protein
LOC_Os02g36470NANA2+22020210..22025828retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24598.1.S1_at--39--7791Chr02:22000029..22000053 (25 bp)
GGTGCCATTGTGGTGCCCTAAGCGC
LOC_Os02g36430
OsAffx.24598.1.S1_at--237--9191Chr02:22000027..22000051 (25 bp)
TGCCATTGTGGTGCCCTAAGCGCCA
LOC_Os02g36430
OsAffx.24598.1.S1_at--965--31Chr02:22000023..22000047 (25 bp)
ATTGTGGTGCCCTAAGCGCCAGGCA
LOC_Os02g36430
OsAffx.24598.1.S1_at--656--10831Chr02:22000022..22000046 (25 bp)
TTGTGGTGCCCTAAGCGCCAGGCAA
LOC_Os02g36430
OsAffx.24598.1.S1_at--785--7491Chr02:22000020..22000044 (25 bp)
GTGGTGCCCTAAGCGCCAGGCAACG
LOC_Os02g36430
OsAffx.24598.1.S1_at--4--1631Chr02:21999979..22000003 (25 bp)
AGCGGCAGTAGCGTCACCGGCATCG
LOC_Os02g36430
OsAffx.24598.1.S1_at--496--8271Chr02:21999976..22000000 (25 bp)
GGCAGTAGCGTCACCGGCATCGATG
LOC_Os02g36430
OsAffx.24598.1.S1_at--144--5031Chr02:21999975..21999999 (25 bp)
GCAGTAGCGTCACCGGCATCGATGC
LOC_Os02g36430
OsAffx.24598.1.S1_at--688--9991Chr02:21999971..21999995 (25 bp)
TAGCGTCACCGGCATCGATGCAAGC
LOC_Os02g36430
OsAffx.24598.1.S1_at--849--1771Chr02:21999964..21999988 (25 bp)
ACCGGCATCGATGCAAGCCCAGATG
LOC_Os02g36430
OsAffx.24598.1.S1_at--143--3951Chr02:21999962..21999986 (25 bp)
CGGCATCGATGCAAGCCCAGATGGC
LOC_Os02g36430
Target Sequence 
GGTGCCATTGTGGTGCCCTAAGCGCCAGGCAACGGGGGCGCCGGAGCCGGAGCGGCAGTAGCGTCACCGGCATCGATGCA
AGCCCAGATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis