Browse Element(s) Details


OsAffx.24656.1.S1_s_at

Description tigr:9630.m03857
TID=OsAffx.24656.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=47435-46588
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4000011/11Sedlin, N-terminal conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39970Os.11820.1.S1_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39970Os.11820.1.S2_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39980OsAffx.2922.1.S1_at11/112+24170601..24171097hypothetical protein
LOC_Os02g39990Os.55784.1.S1_at11/112+24172551..24175424meprin and TRAF homology domain-containing protein, putative, expressed
LOC_Os02g40000Os.10224.1.S1_at11/112+24190342..24195381Sedlin, N-terminal conserved region family protein, expressed
LOC_Os02g40000OsAffx.24656.1.S1_s_at11/112+24190342..24195381Sedlin, N-terminal conserved region family protein, expressed
LOC_Os02g40010Os.9201.2.S1_x_at10/112+24217436..24222893Adenine phosphoribosyltransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24656.1.S1_s_at--600--2991Chr02:24191330..24191354 (25 bp)
AATGATATTCCAATCTACGAGGCTG
LOC_Os02g40000
OsAffx.24656.1.S1_s_at--685--71Chr02:24191336..24191360 (25 bp)
ATTCCAATCTACGAGGCTGAAGTTG
LOC_Os02g40000
OsAffx.24656.1.S1_s_at--632--4751Chr02:24191351..24191374 (24 bp)
GCTGAAGTTGGGTCTGCTCCCAAGA
LOC_Os02g40000
OsAffx.24656.1.S1_s_at--854--2811Chr02:24191355..24191374 (20 bp)
AAGTTGGGTCTGCTCCCAAGAGAGA
LOC_Os02g40000
OsAffx.24656.1.S1_s_at--834--9651Chr02:24192626..24192650 (25 bp)
TCAGCACCAGTTCATATTGCACGCT
LOC_Os02g40000
OsAffx.24656.1.S1_s_at--579--3371Chr02:24192630..24192654 (25 bp)
CACCAGTTCATATTGCACGCTGCAT
LOC_Os02g40000
OsAffx.24656.1.S1_s_at--1052--10731Chr02:24192642..24192666 (25 bp)
TTGCACGCTGCATTAGATGTTGTTC
LOC_Os02g40000
OsAffx.24656.1.S1_s_at--461--6731Chr02:24192663..24192687 (25 bp)
GTTCAGGACCTTGCATGGGCTACAA
LOC_Os02g40000
OsAffx.24656.1.S1_s_at--602--9051Chr02:24192674..24192696 (23 bp)
TGCATGGGCTACAAACACAATGTTT
LOC_Os02g40000
OsAffx.24656.1.S1_s_at--1125--2831Chr02:24192828..24192852 (25 bp)
AAGTCAGTAGACAGATTTGATGATC
LOC_Os02g40000
OsAffx.24656.1.S1_s_at--409--8851Chr02:24192848..24192872 (25 bp)
TGATCTTGTGGTGTCTGTTTATGTA
LOC_Os02g40000
Target Sequence 
AATGATATTCCAATCTACGAGGCTGAAGTTGGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATT
GCACGCTGCATTAGATGTTGTTCAGGACCTTGCATGGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATG
ATCTTGTGGTGTCTGTTTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24656.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis