Browse Element(s) Details


OsAffx.24695.1.S1_at

Description tigr:9630.m04123
TID=OsAffx.24695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL161594 small auxin up RNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4299011/11Auxin responsive protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42960Os.27679.1.A1_at11/112+25849743..25853160expressed protein
LOC_Os02g42970OsAffx.12466.1.S1_at11/112+25853635..25855114No apical meristem protein
LOC_Os02g42980NANA2+25866512..25866909transposon protein, putative, unclassified
LOC_Os02g42990OsAffx.24695.1.S1_at11/112+25873125..25873697Auxin responsive protein, expressed
LOC_Os02g43000OsAffx.12467.1.S1_at10/112+25879153..25880901receptor-like protein kinase, putative, expressed
LOC_Os02g43010Os.15696.1.S1_a_at11/112+25884576..25895049Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os02g43020Os.13461.1.S1_at11/112+25889630..25894023stress-inducible protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24695.1.S1_at--1005--1671Chr02:25873237..25873261 (25 bp)
AGCCGTGCCCGGGAGCTGCAGGCGG
LOC_Os02g42990
OsAffx.24695.1.S1_at--452--4711Chr02:25873274..25873298 (25 bp)
GCTGGCCGCCGGGAGCGTCAAGAAG
LOC_Os02g42990
OsAffx.24695.1.S1_at--112--3411Chr02:25873314..25873338 (25 bp)
CAGCAGCAGATCGTCGTGCATCAGC
LOC_Os02g42990
OsAffx.24695.1.S1_at--1068--5051Chr02:25873316..25873340 (25 bp)
GCAGCAGATCGTCGTGCATCAGCGT
LOC_Os02g42990
OsAffx.24695.1.S1_at--857--5031Chr02:25873319..25873343 (25 bp)
GCAGATCGTCGTGCATCAGCGTGGT
LOC_Os02g42990
OsAffx.24695.1.S1_at--335--6391Chr02:25873322..25873346 (25 bp)
GATCGTCGTGCATCAGCGTGGTGGG
LOC_Os02g42990
OsAffx.24695.1.S1_at--537--8471Chr02:25873378..25873402 (25 bp)
TGGCGCGGCGGATGAGGCTCCTGCG
LOC_Os02g42990
OsAffx.24695.1.S1_at--1022--6371Chr02:25873411..25873435 (25 bp)
GATCCGAGCGGCTCCTGGAGGAATC
LOC_Os02g42990
OsAffx.24695.1.S1_at--345--9291Chr02:25873413..25873437 (25 bp)
TCCGAGCGGCTCCTGGAGGAATCCC
LOC_Os02g42990
OsAffx.24695.1.S1_at--426--7551Chr02:25873523..25873547 (25 bp)
GGTGGTCTACTTCAACCACCCGCTG
LOC_Os02g42990
OsAffx.24695.1.S1_at--835--8591Chr02:25873525..25873549 (25 bp)
TGGTCTACTTCAACCACCCGCTGTT
LOC_Os02g42990
Target Sequence 
AGCCGTGCCCGGGAGCTGCAGGCGGCCGCTCCCCTCTGCTGGCCGCCGGGAGCGTCAAGAAGCAGCCGCCGCCGCCGCAG
CAGCAGATCGTCGTGCATCAGCGTGGTGGGGAGAAGGCGGTGCTCAAGTGGGGGCGGTCGCTGGCGCGGCGGATGAGGCT
CCTGCGGCGGCGGGGATCCGAGCGGCTCCTGGAGGAATCCCCCGGGGAGGCGACGACGCCCAAGGGGCAGGTGGCGGTGT
ACGTGGGCGGCGGCGAGCCCGGGGAGTCGATGAGGTACGTGGTGCCGGTGGTCTACTTCAACCACCCGCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis