Browse Element(s) Details


OsAffx.24713.1.S1_x_at

Description gb:NM_195379.1
DB_XREF= gi:37532117
TID=OsAffx.24713.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0041L14.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1232011/11hypothetical protein
LOC_Os02g439503/11expressed protein
LOC_Os12g014301/11ribosomal protein L10 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12280OsAffx.21897.5.S1_x_at2/1110+6597162..6600087retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12290Os.33792.1.S1_at11/1110+6601968..6606451expressed protein
LOC_Os10g12300Os.6046.1.S1_at7/1110+6611152..6611606hypothetical protein
LOC_Os10g12320OsAffx.24713.1.S1_x_at11/1110+6622461..6622799hypothetical protein
LOC_Os10g12330OsAffx.11115.1.S1_at11/1110+6625660..6629978helicase, putative
LOC_Os10g12354Os.46525.2.S1_x_at11/1110+6633645..6643454NUMOD3 motif family protein, expressed
LOC_Os10g12354Os.46525.1.S1_at11/1110+6633645..6643454NUMOD3 motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24713.1.S1_x_at--636--9696Chr11:27209089..27209113 (25 bp)
TCACTGGGAGATCCGGCGGCTCATT
NONE
OsAffx.24713.1.S1_x_at--651--1271Chr10:6622560..6622584 (25 bp)
AGATCCGGCGGCTCATTGGGATGGA
LOC_Os10g12320
OsAffx.24713.1.S1_x_at--92--8394Chr10:6622624..6622648 (25 bp)
GGCGACGGCGCACGCGAGAGGAGGA
LOC_Os10g12320
OsAffx.24713.1.S1_x_at--259--6194Chr10:6622644..6622668 (25 bp)
GAGGAAGCGGCGACGGCGCACGCGA
LOC_Os10g12320
OsAffx.24713.1.S1_x_at--67--1333Chr10:6622673..6622697 (25 bp)
AGAGGCGGACGAACCGACGCGCGTG
LOC_Os10g12320
OsAffx.24713.1.S1_x_at--455--6792Chr10:6622724..6622748 (25 bp)
GTTTGTACCGGTTCGCGAAATCCAG
LOC_Os10g12320
OsAffx.24713.1.S1_x_at--1144--10212Chr10:6622725..6622749 (25 bp)
TTTGTACCGGTTCGCGAAATCCAGG
LOC_Os10g12320
OsAffx.24713.1.S1_x_at--60--9972Chr10:6622729..6622753 (25 bp)
TACCGGTTCGCGAAATCCAGGCCGT
LOC_Os10g12320
OsAffx.24713.1.S1_x_at--516--7894Chr10:6622733..6622757 (25 bp)
GGTTCGCGAAATCCAGGCCGTCCGT
LOC_Os10g12320
OsAffx.24713.1.S1_x_at--1108--6693Chr10:6622734..6622758 (25 bp)
GTTCGCGAAATCCAGGCCGTCCGTC
LOC_Os10g12320
OsAffx.24713.1.S1_x_at--314--5593Chr10:6622740..6622764 (25 bp)
GAAATCCAGGCCGTCCGTCCACAAT
LOC_Os10g12320
Target Sequence 
TCACTGGGAGATCCGGCGGCTCATTGGGATGGAGCGGCGGCGGCAGCACGGTAGAGGAGAGGGAGCTGCGGCGGCGACGG
CGCACGCGAGAGGAGGAAGCGGCGACGGCGCACGCGAGGGGAGAGGCGGACGAACCGACGCGCGTGGGGAGAGGAGAGGA
CGGGCGGCTAGGGTTTGTACCGGTTCGCGAAATCCAGGCCGTCCGTCCACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24713.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis