Browse Element(s) Details


OsAffx.24736.1.S1_at

Description tigr:9630.m04403
TID=OsAffx.24736.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4541011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45380NANA2+27585294..27586943MATE efflux protein, putative, expressed
LOC_Os02g45390OsAffx.2966.1.S1_at9/112+27596714..27600760Zinc finger, C3HC4 type family protein
LOC_Os02g45400OsAffx.9930.1.S1_at5/112+27605204..27608926transposon protein, putative, Pong sub-class
LOC_Os02g45410OsAffx.24736.1.S1_at11/112+27609887..27610159hypothetical protein
LOC_Os02g45420OsAffx.2967.1.S1_at11/112+27615361..27616404AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24736.1.S1_at--87--9572Chr08:23695131..23695156 (25 bp)
TCTTCACTTTTCTCCTGCAAGCCGG
NONE
OsAffx.24736.1.S1_at--1042--6031Chr02:27609987..27610011 (25 bp)
GAGATCGTCGGTGCGACGAGTTGGC
LOC_Os02g45410
OsAffx.24736.1.S1_at--27--3371Chr02:27610039..27610063 (25 bp)
CACCGCGCCGGGTCAGATTCTTGCA
LOC_Os02g45410
OsAffx.24736.1.S1_at--128--4571Chr02:27610043..27610067 (25 bp)
GCGCCGGGTCAGATTCTTGCACTGG
LOC_Os02g45410
OsAffx.24736.1.S1_at--176--3991Chr02:27610047..27610071 (25 bp)
CGGGTCAGATTCTTGCACTGGCCAA
LOC_Os02g45410
OsAffx.24736.1.S1_at--53--7831Chr02:27610049..27610073 (25 bp)
GGTCAGATTCTTGCACTGGCCAAGG
LOC_Os02g45410
OsAffx.24736.1.S1_at--177--9651Chr02:27610051..27610075 (25 bp)
TCAGATTCTTGCACTGGCCAAGGCT
LOC_Os02g45410
OsAffx.24736.1.S1_at--872--1251Chr02:27610053..27610077 (25 bp)
AGATTCTTGCACTGGCCAAGGCTGC
LOC_Os02g45410
OsAffx.24736.1.S1_at--246--6571Chr02:27610054..27610078 (25 bp)
GATTCTTGCACTGGCCAAGGCTGCG
LOC_Os02g45410
OsAffx.24736.1.S1_at--435--8531Chr02:27610092..27610116 (25 bp)
TGGAGAGTAGGACGGCACGGTTCGA
LOC_Os02g45410
OsAffx.24736.1.S1_at--893--951Chr02:27610100..27610124 (25 bp)
AGGACGGCACGGTTCGAGGAGATGC
LOC_Os02g45410
Target Sequence 
TCTTCACTTTTCTCCTGCAAGCCGGCCGGCGGATGGGGAGGAGATCGTCGGTGCGACGAGTTGGCGGCGGCAGCTGCGAC
ACGGGAGCAGGCCACCGCGCCGGGTCAGATTCTTGCACTGGCCAAGGCTGCGGCGGCGGGGGACGTGGAGAGTAGGACGG
CACGGTTCGAGGAGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis