Browse Element(s) Details


OsAffx.2966.1.S1_at

Description tigr:9630.m04401
TID=OsAffx.2966.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=gene_id:MLN21.11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g453909/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45370OsAffx.22848.4.S1_at2/112+27571685..27577976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g45370OsAffx.22848.4.S1_x_at2/112+27571685..27577976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g45370OsAffx.22848.3.S1_x_at1/112+27571685..27577976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g45380NANA2+27585294..27586943MATE efflux protein, putative, expressed
LOC_Os02g45390OsAffx.2966.1.S1_at9/112+27596714..27600760Zinc finger, C3HC4 type family protein
LOC_Os02g45400OsAffx.9930.1.S1_at5/112+27605204..27608926transposon protein, putative, Pong sub-class
LOC_Os02g45410OsAffx.24736.1.S1_at11/112+27609887..27610159hypothetical protein
LOC_Os02g45420OsAffx.2967.1.S1_at11/112+27615361..27616404AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2966.1.S1_at--550--6411NONE
GATCTCGACCGCACGATTGAGCATA
NONE
OsAffx.2966.1.S1_at--303--3571Chr02:27599033..27599057 (25 bp)
CATACCCGTAGTGGATTGGAACCTT
LOC_Os02g45390
OsAffx.2966.1.S1_at--10--8191Chr02:27599050..27599074 (25 bp)
GGAACCTTTTGTTGTTGCTGCAATT
LOC_Os02g45390
OsAffx.2966.1.S1_at--1030--2831Chr02:27599084..27599108 (25 bp)
AAGTACAGCTACGAGGCCTTCCAAT
LOC_Os02g45390
OsAffx.2966.1.S1_at--400--9711NONE
TCAAAAGATGATGCCCAGTGCTCCA
NONE
OsAffx.2966.1.S1_at--399--5571Chr02:27600268..27600292 (25 bp)
GAAAGAGATTCTGCGCATCATGCCC
LOC_Os02g45390
OsAffx.2966.1.S1_at--529--3551Chr02:27600283..27600307 (25 bp)
CATCATGCCCAAATGCCGTCATAAT
LOC_Os02g45390
OsAffx.2966.1.S1_at--840--5131Chr02:27600343..27600367 (25 bp)
GCAAACTACTTGTCCGATATGCCGG
LOC_Os02g45390
OsAffx.2966.1.S1_at--955--591Chr02:27600361..27600385 (25 bp)
ATGCCGGATCTCATTGAAGGACCTA
LOC_Os02g45390
OsAffx.2966.1.S1_at--564--3831Chr02:27600444..27600681 (25 bp)
CTGAAAGCTCAAAACGCCGTGCGTT
LOC_Os02g45390
OsAffx.2966.1.S1_at--531--5091Chr02:27600699..27600723 (25 bp)
GCACGTACACGGCTTTGGCACAGAA
LOC_Os02g45390
Target Sequence 
GATCTCGACCGCACGATTGAGCATACCCGTAGTGGATTGGAACCTTTTGTTGTTGCTGCAATTCCTACAATGAAGTACAG
CTACGAGGCCTTCCAATCAAAAGATGATGCCCAGTGCTCCATATGTTTAGGTGAATACAATGAGAAAGAGATTCTGCGCA
TCATGCCCAAATGCCGTCATAATTTTCATCTTTCCTGTATAGATGTATGGTTACAAAAGCAAACTACTTGTCCGATATGC
CGGATCTCATTGAAGGACCTACCCAGTGGAAAACCTGCCGAGTCCCCTGTCCGTAGTCTCCCTCAACTATTCAGCCACCC
TGAAAGCTCAAAACGCCGTGCGTTCTTCCAGCAGCAGGGCAGCACGTACACGGCTTTGGCACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis