Browse Element(s) Details


OsAffx.2967.1.S1_at

Description tigr:9630.m04404
TID=OsAffx.2967.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4542011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45390OsAffx.2966.1.S1_at9/112+27596714..27600760Zinc finger, C3HC4 type family protein
LOC_Os02g45400OsAffx.9930.1.S1_at5/112+27605204..27608926transposon protein, putative, Pong sub-class
LOC_Os02g45410OsAffx.24736.1.S1_at11/112+27609887..27610159hypothetical protein
LOC_Os02g45420OsAffx.2967.1.S1_at11/112+27615361..27616404AP2 domain containing protein, expressed
LOC_Os02g45429NANA2+27638381..27638680NA
LOC_Os02g45440OsAffx.24737.1.S1_at10/112+27640872..27642466hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2967.1.S1_at--718--5011Chr02:27615845..27615869 (25 bp)
GCAGGAGCGGCAAATGGGTCTCGGA
LOC_Os02g45420
OsAffx.2967.1.S1_at--869--10071Chr02:27615899..27615923 (25 bp)
TATGGCTCGGGACGTACCCGACCGC
LOC_Os02g45420
OsAffx.2967.1.S1_at--879--7631Chr02:27615907..27615931 (25 bp)
GGGACGTACCCGACCGCCGAGATGG
LOC_Os02g45420
OsAffx.2967.1.S1_at--155--5811Chr02:27615976..27616000 (25 bp)
GACGCGGTGCTCAATTTCCCGGGCG
LOC_Os02g45420
OsAffx.2967.1.S1_at--1119--1511Chr02:27616160..27616184 (25 bp)
AGCAGCAACAGTACGGCAGTGGCAG
LOC_Os02g45420
OsAffx.2967.1.S1_at--1101--1891Chr02:27616199..27616223 (25 bp)
ACGTCTCAGGCTACCCGCCGATGGA
LOC_Os02g45420
OsAffx.2967.1.S1_at--703--8511Chr02:27616233..27616257 (25 bp)
TGGCAATGACGATTTCATGGACGAA
LOC_Os02g45420
OsAffx.2967.1.S1_at--1080--5371Chr02:27616255..27616279 (25 bp)
GAAGAAGCCATCTTCGAGCTGCCTC
LOC_Os02g45420
OsAffx.2967.1.S1_at--1045--2651Chr02:27616259..27616283 (25 bp)
AAGCCATCTTCGAGCTGCCTCAGCT
LOC_Os02g45420
OsAffx.2967.1.S1_at--930--3831Chr02:27616282..27616306 (25 bp)
CTGCTGCGCAACATGGCGGCTGGCA
LOC_Os02g45420
OsAffx.2967.1.S1_at--668--2491Chr02:27616291..27616315 (25 bp)
AACATGGCGGCTGGCATGATGATGA
LOC_Os02g45420
Target Sequence 
GCAGGAGCGGCAAATGGGTCTCGGAGATCCGCGAGCCGCGCAAGGCGCGCCGCATATGGCTCGGGACGTACCCGACCGCC
GAGATGGCCGCCGCGGCCTACGACGTGGCCGCGCGCGCGCTCCGCGGGGCCGACGCGGTGCTCAATTTCCCGGGCGCCAC
CGCCTCCCGCCCTGTCCCGGCGTCCGCATCCCCGGCCGACATACGCGCCGCGGCGGCCGCAGCAGCCGCGGCCGCCGCGC
ACCTTGAGCGGCCGCACGGCCCCACCGGCACTGCCTATCCTGCCACCGCCGCAGCGGAGCACCACCAGCAGCAGCAGCAG
CAACAGTACGGCAGTGGCAGTCCGGCCGCCGACGACGTCTCAGGCTACCCGCCGATGGAGGGAGGGATTGGCAATGACGA
TTTCATGGACGAAGAAGCCATCTTCGAGCTGCCTCAGCTGCTGCGCAACATGGCGGCTGGCATGATGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2967.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis