Browse Element(s) Details


OsAffx.24774.1.S1_at

Description tigr:9630.m04678
TID=OsAffx.24774.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4802011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48000Os.10869.1.S1_at11/112+29367151..29375217TBC domain containing protein, expressed
LOC_Os02g48010Os.11658.1.S2_at11/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48010Os.11658.1.S1_at11/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48010Os.56102.1.S1_x_at10/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48020OsAffx.24774.1.S1_at11/112+29390261..29390748hypothetical protein
LOC_Os02g48030NANA2+29394455..29395504hypothetical protein
LOC_Os02g48040OsAffx.2994.1.S1_at10/112+29399394..29401166hypothetical protein
LOC_Os02g48050OsAffx.2995.1.S1_at11/112+29409281..29410874hypothetical protein
LOC_Os02g48050OsAffx.5258.1.S1_x_at2/112+29409281..29410874hypothetical protein
LOC_Os02g48060Os.56232.1.S1_at11/112+29415532..29417120Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24774.1.S1_at--47--7071Chr02:29390542..29390566 (25 bp)
GTAATCCTAACAGGCCCAACTAGAA
LOC_Os02g48020
OsAffx.24774.1.S1_at--827--871Chr02:29390531..29390555 (25 bp)
AGGCCCAACTAGAAAGTCTCTCACG
LOC_Os02g48020
OsAffx.24774.1.S1_at--343--5571Chr02:29390520..29390544 (25 bp)
GAAAGTCTCTCACGCTGGGCCTTGT
LOC_Os02g48020
OsAffx.24774.1.S1_at--396--8651Chr02:29390505..29390529 (25 bp)
TGGGCCTTGTTGACCGGCCAGTTAG
LOC_Os02g48020
OsAffx.24774.1.S1_at--441--10751Chr02:29390496..29390520 (25 bp)
TTGACCGGCCAGTTAGCCATGCGTT
LOC_Os02g48020
OsAffx.24774.1.S1_at--506--9971Chr02:29390483..29390507 (25 bp)
TAGCCATGCGTTCTGGGCCACCGTT
LOC_Os02g48020
OsAffx.24774.1.S1_at--1065--4491Chr02:29390407..29390431 (25 bp)
GCCGCCTTGAACTCGTCCGTCAAGG
LOC_Os02g48020
OsAffx.24774.1.S1_at--13--1851Chr02:29390370..29390394 (25 bp)
ACGCACGGACCCAACAAGAATTCGA
LOC_Os02g48020
OsAffx.24774.1.S1_at--267--2691Chr02:29390343..29390367 (25 bp)
AAGCTCAACTGAACAAAGCCCAGTG
LOC_Os02g48020
OsAffx.24774.1.S1_at--303--5511Chr02:29390333..29390357 (25 bp)
GAACAAAGCCCAGTGCAACAAGAAT
LOC_Os02g48020
OsAffx.24774.1.S1_at--14--2471Chr02:29390317..29390341 (25 bp)
AACAAGAATTCATGCACTCGCCTCG
LOC_Os02g48020
Target Sequence 
GTAATCCTAACAGGCCCAACTAGAAAGTCTCTCACGCTGGGCCTTGTTGACCGGCCAGTTAGCCATGCGTTCTGGGCCAC
CGTTGCCTTTCCTCGTCGCCAACTCACCTGCCCGGTGGCTCGCAACGTCACTCTCGCCGCCTTGAACTCGTCCGTCAAGG
CCTCCCACCTCCACGCACGGACCCAACAAGAATTCGAACAAGCTCAACTGAACAAAGCCCAGTGCAACAAGAATTCATGC
ACTCGCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis