Browse Element(s) Details


OsAffx.24775.1.S1_at

Description tigr:9630.m04683
TID=OsAffx.24775.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4807011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48040OsAffx.2994.1.S1_at10/112+29399394..29401166hypothetical protein
LOC_Os02g48050OsAffx.2995.1.S1_at11/112+29409281..29410874hypothetical protein
LOC_Os02g48050OsAffx.5258.1.S1_x_at2/112+29409281..29410874hypothetical protein
LOC_Os02g48060Os.56232.1.S1_at11/112+29415532..29417120Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g48070OsAffx.24775.1.S1_at11/112+29421140..29421424hypothetical protein
LOC_Os02g48080Os.16139.1.S1_at10/112+29423895..29426578Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os02g48090OsAffx.12545.1.S1_at11/112+29428158..29428742hypothetical protein
LOC_Os02g48100OsAffx.12546.1.S1_x_at11/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48100Os.17476.1.S1_at10/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48100OsAffx.12546.1.S1_at10/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48110Os.9747.1.S1_at9/112+29446070..29451884dnaK protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24775.1.S1_at--1146--592Chr03:6423693..6423717 (25 bp)
ATGCGGTCGGCGAAGTCGTGGACGA
NONE
OsAffx.24775.1.S1_at--1085--1871Chr02:29421348..29421372 (25 bp)
ACGATGGCGATGGATTCGCACGGCC
LOC_Os02g48070
OsAffx.24775.1.S1_at--771--9371Chr02:29421318..29421342 (25 bp)
TCGGACCCCAGGCTGAGTGCCTTCT
LOC_Os02g48070
OsAffx.24775.1.S1_at--310--10571Chr02:29421297..29421321 (25 bp)
TTCTTCACCTTCGAGAACCCGAGAT
LOC_Os02g48070
OsAffx.24775.1.S1_at--390--4071Chr02:29421286..29421310 (25 bp)
CGAGAACCCGAGATGGCATACCAGA
LOC_Os02g48070
OsAffx.24775.1.S1_at--134--8291Chr02:29421272..29421296 (25 bp)
GGCATACCAGAACCGCCATGCGGAA
LOC_Os02g48070
OsAffx.24775.1.S1_at--967--2611Chr02:29421262..29421286 (25 bp)
AACCGCCATGCGGAATGTGTTGGTG
LOC_Os02g48070
OsAffx.24775.1.S1_at--1105--8671Chr02:29421247..29421271 (25 bp)
TGTGTTGGTGAAACTGCCGCTGGCA
LOC_Os02g48070
OsAffx.24775.1.S1_at--641--5531Chr02:29421238..29421262 (25 bp)
GAAACTGCCGCTGGCAATGGAGCCG
LOC_Os02g48070
OsAffx.24775.1.S1_at--506--4711Chr02:29421229..29421253 (25 bp)
GCTGGCAATGGAGCCGTCGTCGACC
LOC_Os02g48070
OsAffx.24775.1.S1_at--117--4551Chr02:29421170..29421194 (25 bp)
GCCCTCGGGAGTGGCGGCGAATAAG
LOC_Os02g48070
Target Sequence 
ATGCGGTCGGCGAAGTCGTGGACGATGGCGATGGATTCGCACGGCCGCCGCTCGGACCCCAGGCTGAGTGCCTTCTTCAC
CTTCGAGAACCCGAGATGGCATACCAGAACCGCCATGCGGAATGTGTTGGTGAAACTGCCGCTGGCAATGGAGCCGTCGT
CGACCTCCGCGCGAGCGTCGTCGTCACCGCCGTCCCCACGCCCTCGGGAGTGGCGGCGAATAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis