Browse Element(s) Details


OsAffx.24823.1.S1_at

Description tigr:9630.m05023
TID=OsAffx.24823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5117011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51130Os.48353.1.S1_at10/112+31278853..31280690Glycosyl transferase family 8 protein, expressed
LOC_Os02g51140Os.14846.1.S1_at11/112+31284801..31293208expressed protein
LOC_Os02g51150Os.9619.1.S1_at11/112+31293730..31295959Protein SUR2, putative, expressed
LOC_Os02g51160OsAffx.24822.1.S1_at11/112+31297671..31300681expressed protein
LOC_Os02g51170OsAffx.24823.1.S1_at11/112+31302554..31303194expressed protein
LOC_Os02g51180Os.9596.1.S1_at10/112+31303885..31306960Cullin family protein, expressed
LOC_Os02g51190OsAffx.29536.5.S1_x_at1/112+31316985..31319277transposon protein, putative, unclassified
LOC_Os02g51200NANA2+31322377..31328273retrotransposon protein, putative, LINE subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24823.1.S1_at--263--6131Chr02:31303131..31303155 (25 bp)
GAGGGCAACTACTGCCGCTCAGGAG
LOC_Os02g51170
OsAffx.24823.1.S1_at--139--671Chr02:31303080..31303104 (25 bp)
ATGAAGCGGCACTTGTACACGTACG
LOC_Os02g51170
OsAffx.24823.1.S1_at--780--2611Chr02:31303029..31303053 (25 bp)
AACCGATTCGGCGTGTGGTCGCATC
LOC_Os02g51170
OsAffx.24823.1.S1_at--600--9871Chr02:31302993..31303017 (25 bp)
TACATGGCGTACATCAGGAGGACCC
LOC_Os02g51170
OsAffx.24823.1.S1_at--275--991Chr02:31302978..31303002 (25 bp)
AGGAGGACCCGCTACTTCAAGTTCG
LOC_Os02g51170
OsAffx.24823.1.S1_at--341--10511Chr02:31302963..31302987 (25 bp)
TTCAAGTTCGTCAAGATCGGCTGGG
LOC_Os02g51170
OsAffx.24823.1.S1_at--250--4671Chr02:31302902..31302926 (25 bp)
GCGTGTTCGCGTGGTACCAGTGCAC
LOC_Os02g51170
OsAffx.24823.1.S1_at--192--4411Chr02:31302821..31302845 (25 bp)
GCCACACGCCTGCTTGGATGAAGAA
LOC_Os02g51170
OsAffx.24823.1.S1_at--656--5891Chr02:31302759..31302783 (25 bp)
GAGCGGCGTCTCAACAAGCAGAAGC
LOC_Os02g51170
OsAffx.24823.1.S1_at--580--5411Chr02:31302739..31302763 (25 bp)
GAAGCGGCCTCTCGCATTGAAGCAG
LOC_Os02g51170
OsAffx.24823.1.S1_at--80--691Chr02:31302690..31302714 (25 bp)
ATGACCCGTGCAGTACTACTGTTTG
LOC_Os02g51170
Target Sequence 
GAGGGCAACTACTGCCGCTCAGGAGTGCCCGAAGGGAGACGCGCGTTCGCGATGAAGCGGCACTTGTACACGTACGCCCA
CGCGAGCAACATGATCGTCCAGAACCGATTCGGCGTGTGGTCGCATCGAGACCAGGGGTACATGGCGTACATCAGGAGGA
CCCGCTACTTCAAGTTCGTCAAGATCGGCTGGGGGCTCTCGAGGCTGAGGCGGGTGTGCCAGCAGCACGGCGTGTTCGCG
TGGTACCAGTGCACGCCGCGGCGGGAGGAGTTGGAGGCCGCGGAGGCCGGCGTGCGGAGGCTTTTCAGCCGCCACACGCC
TGCTTGGATGAAGAAGCAGAAGCGGCTGCAGAGACGCGAGCGAGAGCGAGATGAGCGGCGTCTCAACAAGCAGAAGCGGC
CTCTCGCATTGAAGCAGCAGCAGCTTAAGGCGCAGGCGCCCATGACCCGTGCAGTACTACTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis