Browse Element(s) Details


OsAffx.24974.1.S1_at

Description tigr:9631.m00436
TID=OsAffx.24974.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GATA zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0516011/11GATA zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05100OsAffx.24970.1.S1_at11/113+2461631..2462449hypothetical protein
LOC_Os03g05110Os.6350.1.S1_at11/113+2466031..2468591Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05120OsAffx.24971.1.S1_at11/113+2471064..2472076hypothetical protein
LOC_Os03g05130NANA3+2473495..2473893hypothetical protein
LOC_Os03g05140OsAffx.3137.1.S1_x_at11/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05140Os.50672.1.S2_x_at1/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05150OsAffx.24973.1.S1_at11/113+2478314..2481211hypothetical protein
LOC_Os03g05160OsAffx.24974.1.S1_x_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05160OsAffx.24974.1.S1_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05170OsAffx.24975.1.S1_at11/113+2486752..2487448hypothetical protein
LOC_Os03g05180Os.56558.1.S1_at11/113+2491981..2495345expressed protein
LOC_Os03g05180OsAffx.12737.1.S1_at6/113+2491981..2495345expressed protein
LOC_Os03g05200Os.25246.1.A1_at11/113+2495970..2505071DENN domain containing protein, expressed
LOC_Os03g05210Os.54611.1.S1_at11/113+2507978..2509531zfwd1 protein, putative, expressed
LOC_Os03g05220NANA3+2510154..2512018expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24974.1.S1_at--1006--1531Chr03:2485301..2485325 (25 bp)
AGCTTGAACGGCTTCTTTGACCACA
LOC_Os03g05160
OsAffx.24974.1.S1_at--844--10731Chr03:2485304..2485328 (25 bp)
TTGAACGGCTTCTTTGACCACACGG
LOC_Os03g05160
OsAffx.24974.1.S1_at--1006--5451Chr03:2485306..2485328 (23 bp)
GAACGGCTTCTTTGACCACACGGGT
LOC_Os03g05160
OsAffx.24974.1.S1_at--814--4891Chr03:2485311..2485435 (25 bp)
GCTTCTTTGACCACACGGGTTTGGA
LOC_Os03g05160
OsAffx.24974.1.S1_at--450--10731Chr03:2485317..2485441 (25 bp)
TTGACCACACGGGTTTGGAGTCGGC
LOC_Os03g05160
OsAffx.24974.1.S1_at--291--5811Chr03:2485506..2485530 (25 bp)
GACGCGTTCCCGTCGGTGGACACCA
LOC_Os03g05160
OsAffx.24974.1.S1_at--1060--4611Chr03:2485509..2485533 (25 bp)
GCGTTCCCGTCGGTGGACACCATGG
LOC_Os03g05160
OsAffx.24974.1.S1_at--50--4491Chr03:2485612..2485636 (25 bp)
GCCGGCGGGTGACTGCTCCGTGGAG
LOC_Os03g05160
OsAffx.24974.1.S1_at--753--7771Chr03:2485708..2485732 (25 bp)
GGTGCACCCACTGCGCCGTGGATGA
LOC_Os03g05160
OsAffx.24974.1.S1_at--394--4651Chr03:2485882..2485906 (25 bp)
GCGTCATGGAGATGCGCCTCCAGAG
LOC_Os03g05160
OsAffx.24974.1.S1_at--649--8551Chr03:2485888..2485912 (25 bp)
TGGAGATGCGCCTCCAGAGCGAGGA
LOC_Os03g05160
Target Sequence 
AGCTTGAACGGCTTCTTTGACCACACGGGTTTGGAGTCGGCGGTGGTAGGGGAGGGGCAAGGGGAAGGGGAGGAGGAGGA
GGAGCTGGAGTGGCTTTCGAACAAGGACGCGTTCCCGTCGGTGGACACCATGGCGGCGGAGGTGGAGTCGGCGGCGCCCG
GGGCGCCGGCGCGCGCGGCGGTGGGGCCGAGGACCAAGGGTTTGCGGCGGCGCCGGCGGGTGACTGCTCCGTGGAGCCTG
GCGCCCCTTCTGTCGCGCCCGCGTCAGGCGGCGGCGGCGGCGGCGGACGCGGGGGCGCCGCGGCGCCGGTGCACCCACTG
CGCCGTGGATGAGACGCCGCAGTGGCGGCTCGGGCCGGACGGCCCCCGCACGCTGTGCAACGCGTGCGGCGTGCGGTTCA
AGTCCGGGCGCCTCTTCCCGGAGTACCGCCCGGCGAACAGCCCCACCTTCTCGCCGCTGCTGCACTCCAACTCCCACCGC
CGCGTCATGGAGATGCGCCTCCAGAGCGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis