Browse Element(s) Details


OsAffx.24975.1.S1_at

Description tigr:9631.m00437
TID=OsAffx.24975.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0517011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05100OsAffx.24970.1.S1_at11/113+2461631..2462449hypothetical protein
LOC_Os03g05110Os.6350.1.S1_at11/113+2466031..2468591Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05120OsAffx.24971.1.S1_at11/113+2471064..2472076hypothetical protein
LOC_Os03g05130NANA3+2473495..2473893hypothetical protein
LOC_Os03g05140OsAffx.3137.1.S1_x_at11/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05140Os.50672.1.S2_x_at1/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05150OsAffx.24973.1.S1_at11/113+2478314..2481211hypothetical protein
LOC_Os03g05160OsAffx.24974.1.S1_x_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05160OsAffx.24974.1.S1_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05170OsAffx.24975.1.S1_at11/113+2486752..2487448hypothetical protein
LOC_Os03g05180Os.56558.1.S1_at11/113+2491981..2495345expressed protein
LOC_Os03g05180OsAffx.12737.1.S1_at6/113+2491981..2495345expressed protein
LOC_Os03g05200Os.25246.1.A1_at11/113+2495970..2505071DENN domain containing protein, expressed
LOC_Os03g05210Os.54611.1.S1_at11/113+2507978..2509531zfwd1 protein, putative, expressed
LOC_Os03g05220NANA3+2510154..2512018expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24975.1.S1_at--467--8591Chr03:2486783..2486807 (25 bp)
TGGTCCGCGAACTACAGGTCTACAG
LOC_Os03g05170
OsAffx.24975.1.S1_at--649--1491Chr03:2486806..2486830 (25 bp)
AGCAACAACAACTCGTGGCGCTGGG
LOC_Os03g05170
OsAffx.24975.1.S1_at--824--3971Chr03:2486881..2486905 (25 bp)
CGGTCCTGGGCATTTCGTCGCGGTA
LOC_Os03g05170
OsAffx.24975.1.S1_at--1092--1291Chr03:2486929..2486953 (25 bp)
AGATGAGATCTTTATGGGTGGCAGT
LOC_Os03g05170
OsAffx.24975.1.S1_at--102--8051Chr03:2486990..2487014 (25 bp)
GGAGAGGAACACTCGCGGTCTCGCA
LOC_Os03g05170
OsAffx.24975.1.S1_at--944--3791Chr03:2487009..2487033 (25 bp)
CTCGCACCGGCCAGATTGTTGTTTG
LOC_Os03g05170
OsAffx.24975.1.S1_at--449--4631Chr03:2487038..2487062 (25 bp)
GGTTGGGTACTTGCGTTGCGTACCA
LOC_Os03g05170
OsAffx.24975.1.S1_at--95--10691Chr03:2487053..2487077 (25 bp)
TTGCGTACCACCAGGGCGCAGAAAA
LOC_Os03g05170
OsAffx.24975.1.S1_at--46--8151Chr03:2487084..2487108 (25 bp)
GGACAAGATCGCTAGCATACCCGGA
LOC_Os03g05170
OsAffx.24975.1.S1_at--795--1531Chr03:2487097..2487121 (25 bp)
AGCATACCCGGATGAAGGCGGCTAC
LOC_Os03g05170
OsAffx.24975.1.S1_at--516--8311Chr03:2487116..2487352 (25 bp)
GGCTACAGCCTACCATTATTAAACC
LOC_Os03g05170
Target Sequence 
TGGTCCGCGAACTACAGGTCTACAGCAACAACAACTCGTGGCGCTGGGGGACTAGCTGGTGTGTGCTGCGCACGGTCGGT
CCTGGGCATTTCGTCGCGGTAGGGGGCGCGGCATCTCAGGGGCGAGATGAGATCTTTATGGGTGGCAGTGGCGGTACGGC
CCCGGAGCACGTGATGGCGGAGAGCGGAGAGGAACACTCGCGGTCTCGCACCGGCCAGATTGTTGTTTGCTTGGGTTGGG
TACTTGCGTTGCGTACCACCAGGGCGCAGAAAACAAATGGGACAAGATCGCTAGCATACCCGGATGAAGGCGGCTACAGC
CTACCATTATTAAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis