Browse Element(s) Details


OsAffx.24980.1.S1_at

Description tigr:9631.m00474
TID=OsAffx.24980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0551011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05470Os.18786.1.S1_at11/113+2686608..2689932Protein kinase domain containing protein, expressed
LOC_Os03g05480Os.25045.1.S1_at11/113+2692428..2695029Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05490OsAffx.12739.1.S1_at11/113+2696842..2697438hypothetical protein
LOC_Os03g05500Os.7112.1.S1_at11/113+2702148..2702946expressed protein
LOC_Os03g05510OsAffx.24980.1.S1_at11/113+2705807..2706670expressed protein
LOC_Os03g05520OsAffx.12740.1.S1_s_at11/113+2718728..2722222expressed protein
LOC_Os03g05530OsAffx.24981.1.S1_at11/113+2727371..2732402Integral membrane protein DUF6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24980.1.S1_at--790--4351Chr03:2706377..2706401 (25 bp)
CCAGCAGCAGGTTCGTATAGTTCAT
LOC_Os03g05510
OsAffx.24980.1.S1_at--430--3591Chr03:2706355..2706379 (25 bp)
CATTCGATCGATGTGTCGCTCGTCG
LOC_Os03g05510
OsAffx.24980.1.S1_at--522--7191Chr03:2706334..2706358 (25 bp)
GTCGGCGTCGCTGGTTTGCTGATCT
LOC_Os03g05510
OsAffx.24980.1.S1_at--1008--10271Chr03:2706320..2706344 (25 bp)
TTTGCTGATCTTGGTGTCGCGGCGC
LOC_Os03g05510
OsAffx.24980.1.S1_at--662--2871Chr03:2706234..2706258 (25 bp)
AAGGGATACACCACCAGGACGTCGG
LOC_Os03g05510
OsAffx.24980.1.S1_at--50--4531Chr03:2706169..2706193 (25 bp)
GCCGCCGACGACCAATTAGGGTACG
LOC_Os03g05510
OsAffx.24980.1.S1_at--402--9851Chr03:2706139..2706163 (25 bp)
TACAACCAGTGGTGCGGCAGCAATG
LOC_Os03g05510
OsAffx.24980.1.S1_at--829--5071Chr03:2706092..2706116 (25 bp)
GCAGCCGGGCGCGTATAGCAGCAAT
LOC_Os03g05510
OsAffx.24980.1.S1_at--1092--7691Chr03:2706019..2706043 (25 bp)
GGGTCGGACTACATGCAGCACTCGC
LOC_Os03g05510
OsAffx.24980.1.S1_at--828--8751Chr03:2705994..2706018 (25 bp)
TGTACCACGCGTTCGAGCACTCGGA
LOC_Os03g05510
OsAffx.24980.1.S1_at--312--9991Chr03:2705839..2705863 (25 bp)
TACCAAGATTGCGAGGATCTCCAGA
LOC_Os03g05510
Target Sequence 
CCAGCAGCAGGTTCGTATAGTTCATTCGATCGATGTGTCGCTCGTCGGCGTCGCTGGTTTGCTGATCTTGGTGTCGCGGC
GCGTGTTCGAACAGGTGATGACGCTGCAGGCGCAGCTGGCGTCGCTCAAGGCGGCGGCGGCGCAAGGGATACACCACCAG
GACGTCGGCGCCACCACCAAGGGCGGCTACATGAGCGCCGCCGCCACCGCCGCCGACGACCAATTAGGGTACGGCGGCTA
CAACCAGTGGTGCGGCAGCAATGGGGGCGGCGCGCCGGCGGCGTCGCAGCCGGGCGCGTATAGCAGCAATGGCGGCGCCG
GCCACGGCCACGACTCCATCACCGCGCTGCTGGCGGCCGGGTCGGACTACATGCAGCACTCGCTGTACCACGCGTTCGAG
CACTCGGAGGGCGCCGGCGCCGTGGACGACGGGCACGCGGCCGCCGCGGCCTTCGAGGCGGCGGCGGAGTCGTCGTCGTG
CGGCATGGCGGCGTCGTTCGCCGCCGACGAGAGCGTGTGGAGGTCGTCGTCGTCGGGATACCAAGATTGCGAGGATCTCC
AGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis