Browse Element(s) Details


OsAffx.2499.1.S1_at

Description tigr:9630.m00303
TID=OsAffx.2499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to WEB1SEC31-like protein transport protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0399011/11transducin family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03970Os.7266.1.S1_at11/112+1708916..1716927Ipomoea nil leaf protein, putative, expressed
LOC_Os02g03980OsAffx.11884.1.S1_at11/112+1719673..1720857F-box protein interaction domain containing protein
LOC_Os02g03990OsAffx.2499.1.S1_at11/112+1723476..1727642transducin family protein, putative
LOC_Os02g04000OsAffx.11884.1.S1_at11/112+1731654..1732793F-box protein interaction domain containing protein
LOC_Os02g04000OsAffx.24088.2.S1_at1/112+1731654..1732793F-box protein interaction domain containing protein
LOC_Os02g04010Os.26853.1.A1_at11/112+1734001..1737472Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g04010Os.12108.1.S1_at10/112+1734001..1737472Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g04020Os.7324.1.S1_at11/112+1743661..1748216phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os02g04030Os.9614.1.S1_at11/112+1748459..1753225Phosphatidylinositol/phosphatidylcholine transfer protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2499.1.S1_at--653--5251Chr02:1725512..1725536 (25 bp)
GAATCTGCTGGCTTCGGGTGCTGCT
LOC_Os02g03990
OsAffx.2499.1.S1_at--641--6551Chr02:1725479..1725503 (25 bp)
GATTATGCTGTATGACCTTGCCCAT
LOC_Os02g03990
OsAffx.2499.1.S1_at--454--571Chr02:1725456..1725480 (25 bp)
ATCCTTTGGCTGAGACAATCCCTGT
LOC_Os02g03990
OsAffx.2499.1.S1_at--783--5591Chr02:1724811..1724835 (25 bp)
GAAATATCTTGCCTCTGCTGGAACT
LOC_Os02g03990
OsAffx.2499.1.S1_at--345--7131Chr02:1724772..1724796 (25 bp)
GTCATAGCATCTACAACCACTTGTG
LOC_Os02g03990
OsAffx.2499.1.S1_at--822--7991Chr02:1724544..1724564 (21 bp)
GGATGTACCACTCTTGATTGCAAAA
LOC_Os02g03990
OsAffx.2499.1.S1_at--189--7411Chr02:1724502..1724526 (25 bp)
GTGATCTTTTGTCCTGATCCTGATT
LOC_Os02g03990
OsAffx.2499.1.S1_at--659--351Chr02:1724290..1724314 (25 bp)
ATAATCCTGCTGGTGAAATCCCCTT
LOC_Os02g03990
OsAffx.2499.1.S1_at--1106--7351Chr02:1724278..1724302 (25 bp)
GTGAAATCCCCTTCAGTAACTCAGA
LOC_Os02g03990
OsAffx.2499.1.S1_at--440--10151Chr02:1724123..1724147 (25 bp)
TATCGTTGCTATGTCTTGGTGCCCA
LOC_Os02g03990
OsAffx.2499.1.S1_at--182--3051Chr02:1724095..1724119 (25 bp)
AATCCCAACTTACTGCTTGCGTGTA
LOC_Os02g03990
Target Sequence 
GAATCTGCTGGCTTCGGGTGCTGCTGATGGGCGGATTATGCTGTATGACCTTGCCCATCCTTTGGCTGAGACAATCCCTG
TTCAGTTATGTGATTCTCCTGATGAAGAAATATCTTGCCTCTGCTGGAACTCCTATAAAGTTCATGTCATAGCATCTACA
ACCACTTGTGGAAGAATATGTTTCCATGATACCAGAGCAAAAACCATCATTGGATGTACCACTCTTGATTGCAAAACTAA
GAGCGGATCAACTGTGATCTTTTGTCCTGATCCTGATTCAGAAAAGTTGCTGGTTGCACGGGAAGATTCACCGTCTGTAA
AGATTTTGAACATGGGAAACACGGATCATAATCCTGCTGGTGAAATCCCCTTCAGTAACTCAGAAGGTATCGTTGCTATG
TCTTGGTGCCCACACAATCCCAACTTACTGCTTGCGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis