Browse Element(s) Details


OsAffx.24997.1.S1_at

Description tigr:9631.m00612
TID=OsAffx.24997.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0683011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06760Os.34216.1.S1_x_at11/113+3414135..3418449exocyst complex component Sec15, putative, expressed
LOC_Os03g06770OsAffx.22251.1.S1_x_at5/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.12758.1.S1_x_at2/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.22252.1.S1_x_at2/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.22252.2.S1_x_at1/113+3422940..3424117hypothetical protein
LOC_Os03g06780OsAffx.22252.2.S1_x_at11/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22251.1.S1_x_at7/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22252.1.S1_x_at3/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.12758.1.S1_x_at2/113+3426110..3426364hypothetical protein
LOC_Os03g06790OsAffx.22251.1.S1_x_at11/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.1.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.2.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.12758.1.S1_x_at2/113+3428614..3428835hypothetical protein
LOC_Os03g06800OsAffx.22252.1.S1_x_at11/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22252.2.S1_x_at4/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22251.1.S1_x_at2/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.12758.1.S1_x_at1/113+3431853..3432119hypothetical protein
LOC_Os03g06810OsAffx.12758.1.S1_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.12758.1.S1_x_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.2.S1_x_at4/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22251.1.S1_x_at3/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.1.S1_x_at1/113+3433880..3434470expressed protein
LOC_Os03g06820OsAffx.3155.1.S1_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06820OsAffx.3155.1.S1_x_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06830OsAffx.24997.1.S1_at11/113+3441932..3442201hypothetical protein
LOC_Os03g06840Os.18038.1.S1_at11/113+3447352..3448250GRF zinc finger family protein, expressed
LOC_Os03g06850Os.38278.2.S1_x_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.2.S1_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.1.S1_at3/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06860Os.36451.2.S1_x_at11/113+3450288..3452699transposon protein, putative, unclassified, expressed
LOC_Os03g06860Os.36451.1.S1_at3/113+3450288..3452699transposon protein, putative, unclassified, expressed
LOC_Os03g06870OsAffx.3156.1.S1_at11/113+3455682..3455939expressed protein
LOC_Os03g06880Os.15977.1.S1_at11/113+3458553..3461310pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os03g06890OsAffx.24998.1.S1_at11/113+3462464..3464819expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24997.1.S1_at--93--991Chr03:3442056..3442080 (25 bp)
AGGAGATGTTCGTCGTCACGCCGGA
LOC_Os03g06830
OsAffx.24997.1.S1_at--354--6031Chr03:3442054..3442078 (25 bp)
GAGATGTTCGTCGTCACGCCGGAGA
LOC_Os03g06830
OsAffx.24997.1.S1_at--142--1311Chr03:3442053..3442077 (25 bp)
AGATGTTCGTCGTCACGCCGGAGAT
LOC_Os03g06830
OsAffx.24997.1.S1_at--710--731Chr03:3442051..3442075 (25 bp)
ATGTTCGTCGTCACGCCGGAGATCC
LOC_Os03g06830
OsAffx.24997.1.S1_at--269--7711Chr03:3442012..3442036 (25 bp)
GGTGGCGCCACAACGACGCCTACGG
LOC_Os03g06830
OsAffx.24997.1.S1_at--994--2191Chr03:3442003..3442027 (25 bp)
ACAACGACGCCTACGGGCAATACGT
LOC_Os03g06830
OsAffx.24997.1.S1_at--150--1831Chr03:3441997..3442021 (25 bp)
ACGCCTACGGGCAATACGTGCAAGG
LOC_Os03g06830
OsAffx.24997.1.S1_at--925--4451Chr03:3441995..3442019 (25 bp)
GCCTACGGGCAATACGTGCAAGGAA
LOC_Os03g06830
OsAffx.24997.1.S1_at--1144--5131Chr03:3441987..3442011 (25 bp)
GCAATACGTGCAAGGAAGGCCCGAC
LOC_Os03g06830
OsAffx.24997.1.S1_at--1131--3171Chr03:3441986..3442010 (25 bp)
CAATACGTGCAAGGAAGGCCCGACC
LOC_Os03g06830
OsAffx.24997.1.S1_at--515--9851Chr03:3441983..3442007 (25 bp)
TACGTGCAAGGAAGGCCCGACCCCT
LOC_Os03g06830
Target Sequence 
AGGAGATGTTCGTCGTCACGCCGGAGATCCTGAAGACCACCGGCGGTGGCGCCACAACGACGCCTACGGGCAATACGTGC
AAGGAAGGCCCGACCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis