Browse Element(s) Details


OsAffx.24998.1.S1_at

Description tigr:9631.m00618
TID=OsAffx.24998.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0689011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06820OsAffx.3155.1.S1_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06820OsAffx.3155.1.S1_x_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06830OsAffx.24997.1.S1_at11/113+3441932..3442201hypothetical protein
LOC_Os03g06840Os.18038.1.S1_at11/113+3447352..3448250GRF zinc finger family protein, expressed
LOC_Os03g06850Os.38278.2.S1_x_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.2.S1_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.1.S1_at3/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06860Os.36451.2.S1_x_at11/113+3450288..3452699transposon protein, putative, unclassified, expressed
LOC_Os03g06860Os.36451.1.S1_at3/113+3450288..3452699transposon protein, putative, unclassified, expressed
LOC_Os03g06870OsAffx.3156.1.S1_at11/113+3455682..3455939expressed protein
LOC_Os03g06880Os.15977.1.S1_at11/113+3458553..3461310pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os03g06890OsAffx.24998.1.S1_at11/113+3462464..3464819expressed protein
LOC_Os03g06900OsAffx.10050.1.S1_at11/113+3468980..3479199DNA topoisomerase family protein, expressed
LOC_Os03g06900OsAffx.15517.1.S1_at1/113+3468980..3479199DNA topoisomerase family protein, expressed
LOC_Os03g06910OsAffx.24999.1.S1_at11/113+3481643..3483589Rf1 protein, mitochondrial precursor, putative
LOC_Os03g06920Os.43861.1.S1_at11/113+3484678..3491994SNF2 domain-containing protein, putative, expressed
LOC_Os03g06920OsAffx.14946.1.S1_at1/113+3484678..3491994SNF2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24998.1.S1_at--436--3611Chr03:3463006..3463030 (25 bp)
CTTGACCTGGAAGCTGAACTTGACA
LOC_Os03g06890
OsAffx.24998.1.S1_at--849--3131Chr03:3462982..3463006 (25 bp)
AATTATCGGAGGCTTCATGAACCAT
LOC_Os03g06890
OsAffx.24998.1.S1_at--1098--6091Chr03:3462915..3462939 (25 bp)
GAGTCTTGGATAGCTCAGATTTCAT
LOC_Os03g06890
OsAffx.24998.1.S1_at--599--7591Chr03:3462815..3462839 (25 bp)
GGGCATGTCTTCCACAGATAGGCAT
LOC_Os03g06890
OsAffx.24998.1.S1_at--618--5491Chr03:3462761..3462785 (25 bp)
GAACATGTCAGTATTGCATCCGGAA
LOC_Os03g06890
OsAffx.24998.1.S1_at--307--2471Chr03:3462738..3462762 (25 bp)
AACACTGGAGCGGTGAGCCGGTTTC
LOC_Os03g06890
OsAffx.24998.1.S1_at--565--5871Chr03:3462724..3462748 (25 bp)
GAGCCGGTTTCTTCTCAACAAATTG
LOC_Os03g06890
OsAffx.24998.1.S1_at--1144--2311Chr03:3462690..3462714 (25 bp)
AAAGTGTTGATTCCGGCTCATGTTC
LOC_Os03g06890
OsAffx.24998.1.S1_at--1096--8311Chr03:3462676..3462700 (25 bp)
GGCTCATGTTCTCACCTAGATGATG
LOC_Os03g06890
OsAffx.24998.1.S1_at--131--5231Chr03:3462648..3462672 (25 bp)
GAATCAGTTCTATGACGAGCGTTAA
LOC_Os03g06890
OsAffx.24998.1.S1_at--322--3731Chr03:3462607..3462631 (25 bp)
CTAAATACTAGATTCACGGCACTTG
LOC_Os03g06890
Target Sequence 
CTTGACCTGGAAGCTGAACTTGACAATTATCGGAGGCTTCATGAACCATTTGGTTGCAAGTTTGATTTTACTGATGGAGA
TATGGCATCTGGAGTCTTGGATAGCTCAGATTTCATGAGGGATACCATGTTTGATTTTGAGGATGAAAAGGCAAATATTT
TGAAATCCTTGAGCAAATTGGAGGAAACACTGGGCATGTCTTCCACAGATAGGCATAATTTTGGTGGCACATATGATAGT
CTACAGAACATGTCAGTATTGCATCCGGAACACTGGAGCGGTGAGCCGGTTTCTTCTCAACAAATTGATGAAAATCAAAG
TGTTGATTCCGGCTCATGTTCTCACCTAGATGATGGCAGAATCAGTTCTATGACGAGCGTTAAACATGAGATTTCACTTC
TAAATACTAGATTCACGGCACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis