Browse Element(s) Details


OsAffx.25044.1.S1_at

Description tigr:9631.m00993
TID=OsAffx.25044.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1079011/11cytochrome b5 domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10760OsAffx.12812.1.S1_at11/113+5473352..5474155expressed protein
LOC_Os03g10770OsAffx.3192.1.S1_at11/113+5474966..5476333Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g10780OsAffx.3193.1.S1_at11/113+5487907..5495787XPG I-region family protein, expressed
LOC_Os03g10790OsAffx.25044.1.S1_at11/113+5496709..5501502cytochrome b5 domain-containing protein, putative
LOC_Os03g10800Os.5794.1.S1_a_at11/113+5509785..5513434transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g10810OsAffx.25045.1.S1_at11/113+5517813..5519436acetyltransferase, GNAT family protein, expressed
LOC_Os03g10820OsAffx.12813.1.S1_s_at11/113+5526246..5530487expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25044.1.S1_at--588--8171Chr03:5498388..5498412 (25 bp)
GGAAGCTCGCCAAATTTCAATTTCT
LOC_Os03g10790
OsAffx.25044.1.S1_at--891--7071Chr03:5498426..5498450 (25 bp)
GTAATAGGATCTGCATCCACATCTT
LOC_Os03g10790
OsAffx.25044.1.S1_at--1102--571Chr03:5498440..5498461 (22 bp)
ATCCACATCTTTCCCTTCAAGTGAT
LOC_Os03g10790
OsAffx.25044.1.S1_at--688--3671Chr03:5498448..5498577 (25 bp)
CTTTCCCTTCAAGTGATGGTTTGAC
LOC_Os03g10790
OsAffx.25044.1.S1_at--386--10751Chr03:5498573..5498597 (25 bp)
TTGACAGATTCTTTACAGGGCTTAT
LOC_Os03g10790
OsAffx.25044.1.S1_at--419--2131Chr03:5498587..5498608 (22 bp)
ACAGGGCTTATCTAGCATGGAGTAT
LOC_Os03g10790
OsAffx.25044.1.S1_at--1103--6871Chr03:5499201..5499225 (25 bp)
GTATTATGCCTGTGTGTTCTCTAAA
LOC_Os03g10790
OsAffx.25044.1.S1_at--503--2051Chr03:5499247..5499271 (25 bp)
ACTTCCTTTCAGGTAAACAGCATTG
LOC_Os03g10790
OsAffx.25044.1.S1_at--306--2491Chr03:5499262..5499286 (25 bp)
AACAGCATTGTTGACTGGAGAAAAT
LOC_Os03g10790
OsAffx.25044.1.S1_at--751--2051Chr03:5499290..5499637 (25 bp)
ACTTCGAGAGATACATATTCGCTGG
LOC_Os03g10790
OsAffx.25044.1.S1_at--66--10231Chr03:5499629..5499652 (24 bp)
TATTCGCTGGTAAAATCGTTGGACG
LOC_Os03g10790
Target Sequence 
GGAAGCTCGCCAAATTTCAATTTCTGCCAGAAATTGATGTAATAGGATCTGCATCCACATCTTTCCCTTCAAGTGATGGT
TTGACAGATTCTTTACAGGGCTTATCTAGCATGGAGTATTATGCCTGTGTGTTCTCTAAAAAAGGTATTATTGGTTTTGT
AACTTCCTTTCAGGTAAACAGCATTGTTGACTGGAGAAAATTTTACTTCGAGAGATACATATTCGCTGGTAAAATCGTTG
GACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis