Browse Element(s) Details


OsAffx.3192.1.S1_at

Description tigr:9631.m00991
TID=OsAffx.3192.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1077011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10710OsAffx.25042.1.S1_at11/113+5451243..5453881hypothetical protein
LOC_Os03g10720NANA3+5456665..5457995hypothetical protein
LOC_Os03g10730OsAffx.25043.1.S1_at11/113+5458401..5459923hypothetical protein
LOC_Os03g10740OsAffx.3191.1.S1_s_at11/113+5460619..5461473expressed protein
LOC_Os03g10740Os.51343.1.S1_at11/113+5460619..5461473expressed protein
LOC_Os03g10750Os.7472.1.S1_at9/113+5462520..5468356CUE domain containing protein, expressed
LOC_Os03g10760OsAffx.12812.1.S1_at11/113+5473352..5474155expressed protein
LOC_Os03g10770OsAffx.3192.1.S1_at11/113+5474966..5476333Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g10780OsAffx.3193.1.S1_at11/113+5487907..5495787XPG I-region family protein, expressed
LOC_Os03g10790OsAffx.25044.1.S1_at11/113+5496709..5501502cytochrome b5 domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3192.1.S1_at--25--6011Chr03:5475916..5475940 (25 bp)
GAGAGCTGCACGGACAACGTCGCGA
LOC_Os03g10770
OsAffx.3192.1.S1_at--346--4791Chr03:5475794..5475903 (25 bp)
GCTCCACGGCAGCAACAGTGGTGCA
LOC_Os03g10770
OsAffx.3192.1.S1_at--579--9971Chr03:5475645..5475669 (25 bp)
TACCTCTCTGATGACGACTCGCTGT
LOC_Os03g10770
OsAffx.3192.1.S1_at--1016--1991Chr03:5475629..5475653 (25 bp)
ACTCGCTGTCGCTGGAGATGACTTC
LOC_Os03g10770
OsAffx.3192.1.S1_at--567--6311Chr03:5475613..5475637 (25 bp)
GATGACTTCGTGCAGCAACGTGAGC
LOC_Os03g10770
OsAffx.3192.1.S1_at--831--5151Chr03:5475599..5475623 (25 bp)
GCAACGTGAGCTCGGCGTCCAAGAA
LOC_Os03g10770
OsAffx.3192.1.S1_at--517--551Chr03:5475505..5475527 (23 bp)
ATCCGCAAAGCCTCTATGCCAGGAA
LOC_Os03g10770
OsAffx.3192.1.S1_at--671--1971Chr03:5475361..5475385 (25 bp)
ACTGCAGAATCTTATCCCAAATGGA
LOC_Os03g10770
OsAffx.3192.1.S1_at--640--7731Chr03:5475218..5475242 (25 bp)
GGTGGACATCAGCACGATGCTTGAA
LOC_Os03g10770
OsAffx.3192.1.S1_at--106--3091Chr03:5475047..5475182 (25 bp)
AATCAAGCTTCTGAGCTCGGATGAT
LOC_Os03g10770
OsAffx.3192.1.S1_at--785--8831Chr03:5475026..5475050 (25 bp)
TGATATGTGGATGTTCGCGCCGATC
LOC_Os03g10770
Target Sequence 
GAGAGCTGCACGGACAACGTCGCGAGGAAGAAGGCGCGCTCCACGGCAGCAACAGTGGTGCAGAAGAAGGGTAATAAGAA
CGCGCAGTCAAAGAAGGCGCAGAAGGGCGCGTGCAGCCGGAGCAGCAACCAGAAGGAGAGCAATGGCGGCGGCGACGGCG
GCAATGTGCAGAGCTCGAGCACCAACTACCTCTCTGATGACGACTCGCTGTCGCTGGAGATGACTTCGTGCAGCAACGTG
AGCTCGGCGTCCAAGAAGTCGTCGTTGTCATCGCCGGCGACCGGGCACGGCGGCGCGAAGGCGAGGGCCGGGCGCGGGGC
GGCGACCGATCCGCAAAGCCTCTATGCCAGGAAGAGGAGAGAAAGGATCAATGAACGGCTAAAGATACTGCAGAATCTTA
TCCCAAATGGAACCAAGGTGGACATCAGCACGATGCTTGAAGAAGCAGTTCACTACGTCAAGTTCTTGCAGCTCCAAATC
AAGCTTCTGAGCTCGGATGATATGTGGATGTTCGCGCCGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis