Browse Element(s) Details


Os.51343.1.S1_at

Description gb:AK062601.1
DB_XREF= gi:32972619
TID=Os.51343.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D06, full insert sequence.
FL= gb:AK062601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1074011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10680Os.50397.1.S1_at11/113+5437214..5441439transposon protein, putative, unclassified, expressed
LOC_Os03g10689NANA3+5443201..5443393NA
LOC_Os03g10700Os.42235.1.S1_x_at1/113+5445904..5447548expressed protein
LOC_Os03g10700Os.42235.1.S1_at1/113+5445904..5447548expressed protein
LOC_Os03g10710OsAffx.25042.1.S1_at11/113+5451243..5453881hypothetical protein
LOC_Os03g10720NANA3+5456665..5457995hypothetical protein
LOC_Os03g10730OsAffx.25043.1.S1_at11/113+5458401..5459923hypothetical protein
LOC_Os03g10740OsAffx.3191.1.S1_s_at11/113+5460619..5461473expressed protein
LOC_Os03g10740Os.51343.1.S1_at11/113+5460619..5461473expressed protein
LOC_Os03g10750Os.7472.1.S1_at9/113+5462520..5468356CUE domain containing protein, expressed
LOC_Os03g10760OsAffx.12812.1.S1_at11/113+5473352..5474155expressed protein
LOC_Os03g10770OsAffx.3192.1.S1_at11/113+5474966..5476333Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51343.1.S1_at--208--6351Chr03:5460837..5460861 (25 bp)
GATGCGATCAGCTATTGTCTAATTT
LOC_Os03g10740
Os.51343.1.S1_at--1026--7971Chr03:5460805..5460829 (25 bp)
GGATGCTAGTCTTATGTTGCTTAGG
LOC_Os03g10740
Os.51343.1.S1_at--761--6671Chr03:5460790..5460814 (25 bp)
GTTGCTTAGGAGCTACCGTTGCTTA
LOC_Os03g10740
Os.51343.1.S1_at--52--4831Chr03:5460779..5460803 (25 bp)
GCTACCGTTGCTTAGGAACTACCGT
LOC_Os03g10740
Os.51343.1.S1_at--130--5471Chr03:5460764..5460788 (25 bp)
GAACTACCGTACTAACTATCCCAGG
LOC_Os03g10740
Os.51343.1.S1_at--386--2531Chr03:5460751..5460775 (25 bp)
AACTATCCCAGGTTATCGATCCATG
LOC_Os03g10740
Os.51343.1.S1_at--700--4031Chr03:5460735..5460759 (25 bp)
CGATCCATGGATGCTGCGAAGTACA
LOC_Os03g10740
Os.51343.1.S1_at--25--4631Chr03:5460706..5460730 (25 bp)
GCGATGAATTTCCTATCTATGACAG
LOC_Os03g10740
Os.51343.1.S1_at--335--491Chr03:5460679..5460703 (25 bp)
ATCTGGTTGTGATGATGTTGCCAAG
LOC_Os03g10740
Os.51343.1.S1_at--78--6291Chr03:5460666..5460690 (25 bp)
GATGTTGCCAAGTGATATACCTGAT
LOC_Os03g10740
Os.51343.1.S1_at--100--9971Chr03:5460649..5460673 (25 bp)
TACCTGATTGTGATGCTGATGTTGC
LOC_Os03g10740
Target Sequence 
GATGCGATCAGCTATTGTCTAATTTTGCTTAGGGATGCTAGTCTTATGTTGCTTAGGAGCTACCGTTGCTTAGGAACTAC
CGTACTAACTATCCCAGGTTATCGATCCATGGATGCTGCGAAGTACAATTTGCGATGAATTTCCTATCTATGACAGATAT
CTGGTTGTGATGATGTTGCCAAGTGATATACCTGATTGTGATGCTGATGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis