Browse Element(s) Details


Os.50397.1.S1_at

Description gb:AK121042.1
DB_XREF= gi:37990665
TID=Os.50397.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052I24, full insert sequence.
FL= gb:AK121042.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1068011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10640Os.50449.1.S1_at11/113+5413028..5419439Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os03g10650Os.11708.1.S1_at11/113+5420861..5423342Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g10660NANA3+5426394..5426609hypothetical protein
LOC_Os03g10670Os.11426.2.S1_x_at1/113+5432527..5432937hypothetical protein
LOC_Os03g10680Os.50397.1.S1_at11/113+5437214..5441439transposon protein, putative, unclassified, expressed
LOC_Os03g10689NANA3+5443201..5443393NA
LOC_Os03g10700Os.42235.1.S1_x_at1/113+5445904..5447548expressed protein
LOC_Os03g10700Os.42235.1.S1_at1/113+5445904..5447548expressed protein
LOC_Os03g10710OsAffx.25042.1.S1_at11/113+5451243..5453881hypothetical protein
LOC_Os03g10720NANA3+5456665..5457995hypothetical protein
LOC_Os03g10730OsAffx.25043.1.S1_at11/113+5458401..5459923hypothetical protein
LOC_Os03g10740OsAffx.3191.1.S1_s_at11/113+5460619..5461473expressed protein
LOC_Os03g10740Os.51343.1.S1_at11/113+5460619..5461473expressed protein
LOC_Os03g10750Os.7472.1.S1_at9/113+5462520..5468356CUE domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50397.1.S1_at--298--9871Chr03:5440947..5440971 (25 bp)
TACTTCCATGGCGACACCGCGAAAG
LOC_Os03g10680
Os.50397.1.S1_at--765--8171Chr03:5440973..5440997 (25 bp)
GGAAGCGCATCCTCTGAGGATATTC
LOC_Os03g10680
Os.50397.1.S1_at--533--7071Chr03:5441018..5441042 (25 bp)
GTCAACGTTGGATCAAGTTTGCAGG
LOC_Os03g10680
Os.50397.1.S1_at--300--1431Chr03:5441067..5441091 (25 bp)
AGAACAGTCATTGGTGGATCGGCTA
LOC_Os03g10680
Os.50397.1.S1_at--660--7511Chr03:5441080..5441104 (25 bp)
GTGGATCGGCTAGGTCATTCCGCAT
LOC_Os03g10680
Os.50397.1.S1_at--439--1031Chr03:5441091..5441115 (25 bp)
AGGTCATTCCGCATCTCAGCAACAT
LOC_Os03g10680
Os.50397.1.S1_at--757--2491Chr03:5441111..5441135 (25 bp)
AACATCCTCATTGCCAGTTCTAAGT
LOC_Os03g10680
Os.50397.1.S1_at--744--6711Chr03:5441127..5441151 (25 bp)
GTTCTAAGTCTCTATGGACAACGGA
LOC_Os03g10680
Os.50397.1.S1_at--444--6491Chr03:5441172..5441196 (25 bp)
GATAGTTCATCGTCATAGGGTAAGA
LOC_Os03g10680
Os.50397.1.S1_at--671--5791Chr03:5441233..5441257 (25 bp)
GACGCACAAACTTTTACAGCTTATA
LOC_Os03g10680
Os.50397.1.S1_at--64--5491Chr03:5441326..5441350 (25 bp)
GAACACCATGTTTAGGAGAGATCAG
LOC_Os03g10680
Target Sequence 
TACTTCCATGGCGACACCGCGAAAGAGGAAGCGCATCCTCTGAGGATATTCATGGTGGTGAGGGACTTCCTGTCAACGTT
GGATCAAGTTTGCAGGGAGGTTGGCCGGATGCAGCAGGACAGAACAGTCATTGGTGGATCGGCTAGGTCATTCCGCATCT
CAGCAACATCCTCATTGCCAGTTCTAAGTCTCTATGGACAACGGAGAGAAAACAACTCCGATGATGATAGTTCATCGTCA
TAGGGTAAGAAGGATAAGGAACATACTGAATTTTGGAATGAACATAGACGCACAAACTTTTACAGCTTATAGCAGATGCA
GCAAATGCTACATTGCTGCTACAATGACGATGACAAAGGAAGCACATGTGTACCGTGGGGAACACCATGTTTAGGAGAGA
TCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis