Browse Element(s) Details


Os.50449.1.S1_at

Description gb:AK121250.1
DB_XREF= gi:37990873
TID=Os.50449.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087M18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101G05, full insert sequence.
FL= gb:AK121250.1 gb:AK100415.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1064011/11Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10610Os.11595.1.S2_at2/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.10155.1.S1_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.13325.1.S1_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.10155.1.S1_x_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10620Os.11186.1.S1_at11/113+5401321..5405247hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g10630OsAffx.12810.1.S1_at9/113+5410221..5411099hypothetical protein
LOC_Os03g10640Os.50449.1.S1_at11/113+5413028..5419439Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os03g10650Os.11708.1.S1_at11/113+5420861..5423342Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g10660NANA3+5426394..5426609hypothetical protein
LOC_Os03g10670Os.11426.2.S1_x_at1/113+5432527..5432937hypothetical protein
LOC_Os03g10680Os.50397.1.S1_at11/113+5437214..5441439transposon protein, putative, unclassified, expressed
LOC_Os03g10689NANA3+5443201..5443393NA

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005773cellular_componentvacuole
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0009706cellular_componentchloroplast inner membrane
GO:0005262molecular_functioncalcium channel activity
GO:0005388molecular_functioncalcium-transporting ATPase activity
GO:0005516molecular_functioncalmodulin binding
GO:0015085molecular_functioncalcium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50449.1.S1_at--911--5111Chr03:5418857..5418881 (25 bp)
GCACAGTCATCTTCCAGTTCATAAT
LOC_Os03g10640
Os.50449.1.S1_at--991--9851Chr03:5418884..5418908 (25 bp)
TACAGTTCCTGGGTGATTTCGCCAA
LOC_Os03g10640
Os.50449.1.S1_at--732--1851Chr03:5418910..5418934 (25 bp)
ACGACTCCTCTCACATTGAAGCAGT
LOC_Os03g10640
Os.50449.1.S1_at--97--1991Chr03:5418941..5418965 (25 bp)
ACTGCATTTTCATCGGTTTCATAGG
LOC_Os03g10640
Os.50449.1.S1_at--1124--6811Chr03:5418956..5418980 (25 bp)
GTTTCATAGGGATGCCGATCGCTGC
LOC_Os03g10640
Os.50449.1.S1_at--642--9131Chr03:5418981..5419005 (25 bp)
TGCGGTCAAGCTGATCCCAGTTGAT
LOC_Os03g10640
Os.50449.1.S1_at--396--10431Chr03:5419060..5419084 (25 bp)
TTAGAGGCAGTACCATGGGCATAAC
LOC_Os03g10640
Os.50449.1.S1_at--306--3291Chr03:5419084..5419108 (25 bp)
CAAAGTTCTCTTTATGCGCTTGTTT
LOC_Os03g10640
Os.50449.1.S1_at--992--7431Chr03:5419193..5419217 (25 bp)
GTGTAGATCTTTCCTTCATGTCATT
LOC_Os03g10640
Os.50449.1.S1_at--804--10751Chr03:5419330..5419354 (25 bp)
TTGACTCGTGTAAGTTTCTTCCCTT
LOC_Os03g10640
Os.50449.1.S1_at--484--8451Chr03:5419378..5419402 (25 bp)
TGGCCAATCTGGGACTGTAGCAAAG
LOC_Os03g10640
Target Sequence 
GCACAGTCATCTTCCAGTTCATAATAGTACAGTTCCTGGGTGATTTCGCCAACACGACTCCTCTCACATTGAAGCAGTGG
TTCAACTGCATTTTCATCGGTTTCATAGGGATGCCGATCGCTGCTGCGGTCAAGCTGATCCCAGTTGATTTCTAAGTAGG
AAAGCAGAACTAATTCAAGACACGGGACTGAAGTCGGTAGGGATTAGAGGCAGTACCATGGGCATAACAAAGTTCTCTTT
ATGCGCTTGTTTNGATGTGAACCTCTGCCCCCCCCCCCCCCCCCCTTTTTTTCTTGCAGAGTATGATCCAAGATTGTATG
GTGTTTAATGGACTCGTGTAGATCTTTCCTTCATGTCATTTTCCTCATGTTCTTTCCTTGGAATGTTGGAACTTGCAATT
GTATATGGATCGCTTGATAAGTTTGACATTTGTTTGATTCNACACCCTTGAGTCCTTGACAGGGTGTATGAATTGACTCG
TGTAAGTTTCTTCCCTTGTTGCCATCCTACTGTTTTTTTGTGGCCAATCTGGGACTGTAGCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis