Browse Element(s) Details


Os.7472.1.S1_at

Description gb:AK069442.1
DB_XREF= gi:32979466
TID=Os.7472.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7472 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023025N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025N13, full insert sequence.
FL= gb:AK069442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g107509/11CUE domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10680Os.50397.1.S1_at11/113+5437214..5441439transposon protein, putative, unclassified, expressed
LOC_Os03g10689NANA3+5443201..5443393NA
LOC_Os03g10700Os.42235.1.S1_x_at1/113+5445904..5447548expressed protein
LOC_Os03g10700Os.42235.1.S1_at1/113+5445904..5447548expressed protein
LOC_Os03g10710OsAffx.25042.1.S1_at11/113+5451243..5453881hypothetical protein
LOC_Os03g10720NANA3+5456665..5457995hypothetical protein
LOC_Os03g10730OsAffx.25043.1.S1_at11/113+5458401..5459923hypothetical protein
LOC_Os03g10740OsAffx.3191.1.S1_s_at11/113+5460619..5461473expressed protein
LOC_Os03g10740Os.51343.1.S1_at11/113+5460619..5461473expressed protein
LOC_Os03g10750Os.7472.1.S1_at9/113+5462520..5468356CUE domain containing protein, expressed
LOC_Os03g10760OsAffx.12812.1.S1_at11/113+5473352..5474155expressed protein
LOC_Os03g10770OsAffx.3192.1.S1_at11/113+5474966..5476333Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g10780OsAffx.3193.1.S1_at11/113+5487907..5495787XPG I-region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7472.1.S1_at--653--7571Chr03:5462740..5462764 (25 bp)
GGGCTTTAGTTGATGGTTTTCACCA
LOC_Os03g10750
Os.7472.1.S1_at--1094--7871Chr03:5462726..5462750 (25 bp)
GGTTTTCACCATCGTTTTTCATTGC
LOC_Os03g10750
Os.7472.1.S1_at--592--511Chr03:5462716..5462740 (25 bp)
ATCGTTTTTCATTGCGGGAACTGTA
LOC_Os03g10750
Os.7472.1.S1_at--956--10391Chr03:5462674..5462698 (25 bp)
TTTTGACGTGGTCTAGACTCGGCCA
LOC_Os03g10750
Os.7472.1.S1_at--550--5711Chr03:5462659..5462683 (25 bp)
GACTCGGCCAAAGCATACGATGCCT
LOC_Os03g10750
Os.7472.1.S1_at--1117--4951Chr03:5462647..5462671 (25 bp)
GCATACGATGCCTTGAAGCATCCTT
LOC_Os03g10750
Os.7472.1.S1_at--359--6551Chr03:5462620..5462644 (25 bp)
GATTACTACTCGTATATTTTACCCA
LOC_Os03g10750
Os.7472.1.S1_at--530--171Chr03:5462605..5462629 (25 bp)
ATTTTACCCATAGCATGTGGAATCA
LOC_Os03g10750
Os.7472.1.S1_at--80--6951Chr03:5462557..5462581 (25 bp)
GTAGCTTCGGACAGAATACAAAGTT
LOC_Os03g10750
Os.7472.1.S1_at--973--6451NONE
GATAACATTAAACATCCAGCAACAA
NONE
Os.7472.1.S1_at--1106--5991NONE
GAGAGCAGAAATCAAGGTCATTTAT
NONE
Target Sequence 
GGGCTTTAGTTGATGGTTTTCACCATCGTTTTTCATTGCGGGAACTGTAAATGTGACAGTATTTTTTTTTGACGTGGTCT
AGACTCGGCCAAAGCATACGATGCCTTGAAGCATCCTTATGATTACTACTCGTATATTTTACCCATAGCATGTGGAATCA
AACTATTGATGATCATATNTCTTGTAGCTTCGGACAGAATACAAAGTTTGAATCTCATAAATGAAAGTTAAATCNNNNNN
NNNCTAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAACAAAAAAAAAAAAAA
ATTTAGAACGGAATAAGACCAAGATAACATTAAACATCCAGCAACAATAATGCATAGAGAGCAGAAATCAAGGTCATTTA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis