Browse Element(s) Details


OsAffx.25077.1.S1_at

Description tigr:9631.m01212
TID=OsAffx.25077.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Homeobox associated leucine zipper, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1286011/11Homeobox associated leucine zipper family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12840Os.2488.1.S1_at11/113+6881231..6886590inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g12850OsAffx.3215.1.S1_at11/113+6887259..6888246hypothetical protein
LOC_Os03g12860OsAffx.25077.1.S1_at11/113+6910822..6912441Homeobox associated leucine zipper family protein, expressed
LOC_Os03g12860Os.49754.1.S1_x_at10/113+6910822..6912441Homeobox associated leucine zipper family protein, expressed
LOC_Os03g12870Os.27542.1.A1_at1/113+6919618..6921929hypothetical protein
LOC_Os03g12879Os.49137.1.S1_at11/113+6922092..6923188expressed protein
LOC_Os03g12890Os.10150.1.S1_at11/113+6927108..6930064Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os03g12900Os.28127.2.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900Os.28127.1.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900OsAffx.8676.1.S1_at1/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12910Os.20969.1.S1_at11/113+6936767..6941707Squalene monooxygenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25077.1.S1_at--988--1851Chr03:6911406..6911430 (25 bp)
ACGACGGGAGCACCCGCAAGAAGCT
LOC_Os03g12860
OsAffx.25077.1.S1_at--462--3811Chr03:6911429..6911453 (25 bp)
CTCCGGCTGACCAAGGAGCAGTCCG
LOC_Os03g12860
OsAffx.25077.1.S1_at--1001--1511Chr03:6911445..6911469 (25 bp)
AGCAGTCCGCGCTCCTGGAGGACCG
LOC_Os03g12860
OsAffx.25077.1.S1_at--518--3911Chr03:6911459..6911483 (25 bp)
CTGGAGGACCGCTTCCGGGAGCACA
LOC_Os03g12860
OsAffx.25077.1.S1_at--1083--4911Chr03:6911469..6911493 (25 bp)
GCTTCCGGGAGCACAGCACGCTCAA
LOC_Os03g12860
OsAffx.25077.1.S1_at--390--2151Chr03:6911481..6911712 (25 bp)
ACAGCACGCTCAACCCGAAGCAGAA
LOC_Os03g12860
OsAffx.25077.1.S1_at--740--2611Chr03:6911492..6911723 (25 bp)
AACCCGAAGCAGAAAGTCGCTTTAG
LOC_Os03g12860
OsAffx.25077.1.S1_at--1134--1131Chr03:6911713..6911737 (25 bp)
AGTCGCTTTAGCGAAGCAACTGAAC
LOC_Os03g12860
OsAffx.25077.1.S1_at--1067--5131Chr03:6911728..6911752 (25 bp)
GCAACTGAACCTCAGGCCAAGGCAG
LOC_Os03g12860
OsAffx.25077.1.S1_at--1069--9671Chr03:6912155..6912179 (25 bp)
TCACCGAGGAGAACCGTCGGCTGCA
LOC_Os03g12860
OsAffx.25077.1.S1_at--677--1771Chr03:6912261..6912285 (25 bp)
ACCGGCGCCGTTCTACATGCAACTC
LOC_Os03g12860
Target Sequence 
ACGACGGGAGCACCCGCAAGAAGCTCCGGCTGACCAAGGAGCAGTCCGCGCTCCTGGAGGACCGCTTCCGGGAGCACAGC
ACGCTCAACCCGAAGCAGAAAGTCGCTTTAGCGAAGCAACTGAACCTCAGGCCAAGGCAGGTGGAGGTCTGGTTCCAAAA
CAGAAGAGCAAGGACAAAGCTGAAGCAGACGGAGGTGGACTGCGAGTTCCTGAAGCGCTGCTGCGAGACGCTCACCGAGG
AGAACCGTCGGCTGCAGCGCGAGCTGCAGGAGCTCCGCGCGCTCAAGTTCGCCCCGCCGCCGCCGTCCTCGGCGGCCCAC
CAGCCGTCGCCGGCGCCACCGGCGCCGTTCTACATGCAACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis