Browse Element(s) Details


OsAffx.25079.1.S1_at

Description tigr:9631.m01223
TID=OsAffx.25079.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1294011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12900Os.28127.2.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900Os.28127.1.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900OsAffx.8676.1.S1_at1/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12910Os.20969.1.S1_at11/113+6936767..6941707Squalene monooxygenase, putative, expressed
LOC_Os03g12920NANA3+6945583..6946134hypothetical protein
LOC_Os03g12930OsAffx.25078.1.S1_s_at11/113+6953876..6957221expressed protein
LOC_Os03g12930OsAffx.25078.1.S1_at11/113+6953876..6957221expressed protein
LOC_Os03g12930Os.54564.1.S1_at10/113+6953876..6957221expressed protein
LOC_Os03g12940OsAffx.25079.1.S1_at11/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12940Os.52614.1.S1_at11/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12940Os.8509.1.S1_at1/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12950Os.54629.1.S1_at11/113+6971992..6976294ANT, putative, expressed
LOC_Os03g12960OsAffx.3217.1.S1_at11/113+6983091..6983344hypothetical protein
LOC_Os03g12970OsAffx.25080.1.S1_at11/113+6986053..6986286hypothetical protein
LOC_Os03g12970OsAffx.1780.1.S1_x_at2/113+6986053..6986286hypothetical protein
LOC_Os03g12980OsAffx.12837.1.S1_at10/113+6988854..6989636hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25079.1.S1_at--186--911Chr03:6961235..6961259 (25 bp)
AGGCGAGGGCAGTTCATCGCTACAT
LOC_Os03g12940
OsAffx.25079.1.S1_at--287--6091Chr03:6961039..6961063 (25 bp)
GAGTACGTGCATGTCCGGGCAAAAC
LOC_Os03g12940
OsAffx.25079.1.S1_at--292--671Chr03:6960867..6960891 (25 bp)
ATGAAGCTTCTGCAGGACCTCGTCC
LOC_Os03g12940
OsAffx.25079.1.S1_at--389--3791Chr03:6960853..6960873 (21 bp)
CTCGTCCCAGGATGCAACAAGATTA
LOC_Os03g12940
OsAffx.25079.1.S1_at--1158--1631Chr03:6960582..6960712 (25 bp)
AGCGACAGGTGGAGTTCCTCTCGAT
LOC_Os03g12940
OsAffx.25079.1.S1_at--209--5411Chr03:6960557..6960581 (25 bp)
GAAGCTCTCGACAATCAGTCCTGAG
LOC_Os03g12940
OsAffx.25079.1.S1_at--511--8911Chr03:6960210..6960548 (25 bp)
TGACCTCGACCTGCAAGATATCCTT
LOC_Os03g12940
OsAffx.25079.1.S1_at--1134--10251Chr03:6960411..6960435 (25 bp)
TTTGTTCACAAGATGCTCGCTCCGC
LOC_Os03g12940
OsAffx.25079.1.S1_at--394--7991Chr03:6960379..6960403 (25 bp)
GGATGCAGCCCGCAATTGAGCAATG
LOC_Os03g12940
OsAffx.25079.1.S1_at--101--6131Chr03:6960296..6960320 (25 bp)
GAGTGTGTGTGTCCCAAATCCCGCA
LOC_Os03g12940
OsAffx.25079.1.S1_at--1133--3031Chr03:6960280..6960304 (25 bp)
AATCCCGCAGATGTTCATTTGGCAA
LOC_Os03g12940
Target Sequence 
AGGCGAGGGCAGTTCATCGCTACATTCCCAAGAGGAAACCGGTGAAATGCCTCAGAGAGAACTCAGCATGGAGCATGCCG
GAGAGAAGGCGGGTGATGCTGACGCTAGCAGGGAGGAGTACGTGCATGTCCGGGCAAAACGCGGCCAGGCGACCAACAGC
CACAGCCTTGCAGAAAGATTTCGAAGGGAGAAGATAAACGAAAGGATGAAGCTTCTGCAGGACCTCGTCCCAGGATGCAA
CAAGATTACAGGGAAGGCCATGATGCTCGACGAGATCATAAACTACGTCCAGTCTCTGCAGCGACAGGTGGAGTTCCTCT
CGATGAAGCTCTCGACAATCAGTCCTGAGTTGAACTCTGACCTCGACCTGCAAGATATCCTTTGTTCACAAGATGCTCGC
TCCGCATTTCTGGGATGCAGCCCGCAATTGAGCAATGCCCATCCTAACCTTTACAGGGCGGCTCAGCAATGCCTCTCACC
TCCTGGCTTGTACGGGAGTGTGTGTGTCCCAAATCCCGCAGATGTTCATTTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis