Browse Element(s) Details


OsAffx.25156.1.S1_x_at

Description tigr:9638.m01455
TID=OsAffx.25156.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1762011/11hypothetical protein
LOC_Os09g048205/11hypothetical protein
LOC_Os04g020904/11hypothetical protein
LOC_Os12g191403/11hypothetical protein
LOC_Os09g146402/11hypothetical protein
LOC_Os05g080402/11retrotransposon protein, putative, unclassified
LOC_Os05g226602/11retrotransposon protein, putative, unclassified
LOC_Os11g177002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g200602/11hypothetical protein
LOC_Os07g150501/11hypothetical protein
LOC_Os12g174701/11Transposable element protein, putative, Transposase_28
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17580NANA10+8548074..8549847retrotransposon, putative, centromere-specific
LOC_Os10g17590NANA10+8551353..8553053retrotransposon, putative, centromere-specific
LOC_Os10g17600OsAffx.6683.1.S1_at11/1110+8560702..8562492hypothetical protein
LOC_Os10g17610Os.45212.1.S1_x_at10/1110+8564391..8570345retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17620OsAffx.25156.1.S1_x_at11/1110+8571616..8574308hypothetical protein
LOC_Os10g17620OsAffx.25156.4.S1_x_at3/1110+8571616..8574308hypothetical protein
LOC_Os10g17620OsAffx.25156.5.S1_x_at3/1110+8571616..8574308hypothetical protein
LOC_Os10g17630Os.49402.1.S1_at10/1110+8576763..8579068B3 DNA binding domain containing protein, expressed
LOC_Os10g17640OsAffx.6684.1.S1_at11/1110+8585708..8585996hypothetical protein
LOC_Os10g17650Os.46489.1.S1_at11/1110+8588927..8594834Glycosyl hydrolase family 1 protein, expressed
LOC_Os10g17660Os.12777.1.S1_a_at11/1110+8596569..8597679Profilin A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25156.1.S1_x_at--407--1396Chr09:2569874..2569898 (25 bp)
AGACCGACAACTTGCTTCGGCCGAG
LOC_Os09g04820
OsAffx.25156.1.S1_x_at--283--4851Chr10:8572110..8572134 (25 bp)
GCTACTGCTGCGACCCTGGTACCGG
LOC_Os10g17620
OsAffx.25156.1.S1_x_at--372--9152Chr09:2569950..2569973 (24 bp)
TGCGACCCTGGTACCGGCCACAGAG
LOC_Os09g04820
OsAffx.25156.1.S1_x_at--569--2916Chr12:11107475..11107499 (25 bp)
AAGGAGGCCTGTTACACTCTCCGGC
LOC_Os12g19140
OsAffx.25156.1.S1_x_at--147--9031Chr10:8571991..8572015 (25 bp)
TGCACTCGATTTCTCTGAATGGACG
LOC_Os10g17620
OsAffx.25156.1.S1_x_at--165--2012Chr10:8571988..8572012 (25 bp)
ACTCGATTTCTCTGAATGGACGCAA
LOC_Os10g17620
OsAffx.25156.1.S1_x_at--653--10036Chr09:2570073..2570097 (25 bp)
TTGTCGAAGTGGCAGGCGCCTACGG
LOC_Os09g04820
OsAffx.25156.1.S1_x_at--570--10711Chr10:8571916..8571940 (25 bp)
TTGCGCTCGTGTTTCGGCAGGATTC
LOC_Os10g17620
OsAffx.25156.1.S1_x_at--653--5296Chr09:2570195..2570219 (25 bp)
GAATGGCCTAGCAACACGCAGTGCT
LOC_Os09g04820
OsAffx.25156.1.S1_x_at--216--2315Chr09:2570281..2570305 (25 bp)
AAAGATTCGACTCCGCGAGAACCTT
LOC_Os09g04820
OsAffx.25156.1.S1_x_at--387--7191Chr10:8571655..8571679 (25 bp)
GTCGGAACAGTCACCCGGGCACGAG
LOC_Os10g17620
Target Sequence 
AGACCGACAACTTGCTTCGGCCGAGGAGAAGATTAAATCCCTCGAAGCCCGTCTCGCGTCGGCCGAAGCTACTGCTGCGA
CCCTGGTACCGGCCACAGAGTCTGCCAAGGAGGCCTGTTACACTCTCCGGCTGGCCCTTAACGACCTTGGGGCGCGGGCG
GAAGGTGCTCCGGGCGAAGGCAGGACTGCACTCGATTTCTCTGAATGGACGCAAGAGGTGGCCGGCTCGGTTGTCGAAGT
GGCAGGCGCCTACGGGGACTGTTGCGCTCGTGTTTCGGCAGGATTCGCTCTCAGCCTCTTGCATGCGCACGGCTGCGACC
ACATCGGGAATTTTCCCAAATTCGTGAAGGAAGAATGGCCTAGCAACACGCAGTGCTCCGGAGCTACGCTAAGGGCCTTT
CGGAAGGGGTTTTGGGAGGATGGCGGCCGGGATTGTGCAAAGATTCGACTCCGCGAGAACCTTGAGAGGATCGCGAGGAA
CGAGGAGGCCGCTGCCGCCAACTCCGAAAAGGATCCCGGGCCGTCGGAACAGTCACCCGGGCACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25156.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis