Browse Element(s) Details


OsAffx.25217.2.S1_x_at

Description tigr:9631.m02438
TID=OsAffx.25217.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2497011/11SWIM zinc finger family protein
LOC_Os03g2498011/11SWIM zinc finger family protein
LOC_Os04g3087010/11transposon protein, putative, unclassified
LOC_Os04g493805/11transposon protein, putative, unclassified
LOC_Os03g401604/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24950Os.16999.1.A1_at11/113+14212011..14214838expressed protein
LOC_Os03g24960Os.33624.3.S1_x_at10/113+14228001..14232343Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g24960OsAffx.25216.1.S1_x_at5/113+14228001..14232343Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g24970OsAffx.25217.2.S1_x_at11/113+14232597..14233688SWIM zinc finger family protein
LOC_Os03g24970OsAffx.29607.3.S1_x_at1/113+14232597..14233688SWIM zinc finger family protein
LOC_Os03g24970OsAffx.29607.5.S1_x_at1/113+14232597..14233688SWIM zinc finger family protein
LOC_Os03g24980OsAffx.25217.2.S1_x_at11/113+14234177..14237333SWIM zinc finger family protein
LOC_Os03g24990Os.33624.3.S1_x_at10/113+14237587..14241404Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g24990OsAffx.25216.1.S1_x_at5/113+14237587..14241404Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g25000OsAffx.3317.1.S1_at11/113+14247529..14250741GDSL-like Lipase/Acylhydrolase family protein
LOC_Os03g25010OsAffx.13013.1.S1_at11/113+14255279..14258382GDSL-like Lipase/Acylhydrolase family protein

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Gene Ontology Classification
GO idTypeName
GO:0009639biological_processresponse to red or far red light
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25217.2.S1_x_at--706--155Chr04:29256098..29256122 (25 bp)
ATTATACCTTTATCGGAGAGCTCAG
LOC_Os04g49380
OsAffx.25217.2.S1_x_at--648--8054Chr04:29256112..29256136 (25 bp)
GGAGAGCTCAGTCCTCAGATTCAAT
LOC_Os04g49380
OsAffx.25217.2.S1_x_at--514--8695Chr04:29256152..29256176 (25 bp)
TGTGCTGAAATAGCCTCACAAGGAT
LOC_Os04g49380
OsAffx.25217.2.S1_x_at--601--1194Chr04:29256182..29256206 (25 bp)
AGTATTGATTCGTTCCAATTTGCAG
LOC_Os04g49380
OsAffx.25217.2.S1_x_at--608--6694Chr04:29256193..29256217 (25 bp)
GTTCCAATTTGCAGTTGATCAGATT
LOC_Os04g49380
OsAffx.25217.2.S1_x_at--870--2275Chr04:29256373..29256397 (25 bp)
AAAGGGAAGACCATCTCAAAGATAC
NONE
OsAffx.25217.2.S1_x_at--971--7034Chr04:29256423..29256447 (25 bp)
GTAAAGAAGTTTATCATTGCAGTCA
NONE
OsAffx.25217.2.S1_x_at--390--73Chr04:29256438..29256462 (25 bp)
ATTGCAGTCATTGTCAACGAACAGA
NONE
OsAffx.25217.2.S1_x_at--353--2495Chr04:29256457..29256481 (25 bp)
AACAGATCACACTTTTCCAACATGC
NONE
OsAffx.25217.2.S1_x_at--285--2034Chr04:29256467..29256491 (25 bp)
ACTTTTCCAACATGCCCTCTAAAGC
NONE
OsAffx.25217.2.S1_x_at--947--4534Chr04:29256480..29256504 (25 bp)
GCCCTCTAAAGCACATTGAATTTGA
NONE
Target Sequence 
ATTATACCTTTATCGGAGAGCTCAGTCCTCAGATTCAATATTCTNTCAAGGAAATGTGCTGAAATAGCCTCACAAGGATC
AAAAAGTATTGATTCGTTCCAATTTGCAGTTGATCAGATTGACAAGNTAGAAAAAGAATTGATATCAATGAATTCAGAGC
AAAGAACAAAGCAGNAAATGGAGATAGACAAAACAGATACAACAAATGGAGAAGTCATTGAAGAAACAGAAGAAAACAAT
GAAGAAATTTTGATAGATCCAGACATAGCAAAGTCAAAGGGAAGACCATCTCAAAGATACAAATCATTTAGAGAGGAATT
ACAGAGTAAAGAAGTTTATCATTGCAGTCATTGTCAACGAACAGATCACACTTTTCCAACATGCCCTCTAAAGCACATTG
AATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25217.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis