Browse Element(s) Details


OsAffx.3317.1.S1_at

Description tigr:9631.m02441
TID=OsAffx.3317.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2500011/11GDSL-like Lipase/Acylhydrolase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24960Os.33624.3.S1_x_at10/113+14228001..14232343Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g24960OsAffx.25216.1.S1_x_at5/113+14228001..14232343Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g24970OsAffx.25217.2.S1_x_at11/113+14232597..14233688SWIM zinc finger family protein
LOC_Os03g24970OsAffx.29607.3.S1_x_at1/113+14232597..14233688SWIM zinc finger family protein
LOC_Os03g24970OsAffx.29607.5.S1_x_at1/113+14232597..14233688SWIM zinc finger family protein
LOC_Os03g24980OsAffx.25217.2.S1_x_at11/113+14234177..14237333SWIM zinc finger family protein
LOC_Os03g24990Os.33624.3.S1_x_at10/113+14237587..14241404Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g24990OsAffx.25216.1.S1_x_at5/113+14237587..14241404Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g25000OsAffx.3317.1.S1_at11/113+14247529..14250741GDSL-like Lipase/Acylhydrolase family protein
LOC_Os03g25010OsAffx.13013.1.S1_at11/113+14255279..14258382GDSL-like Lipase/Acylhydrolase family protein
LOC_Os03g25020OsAffx.25218.1.S1_at11/113+14261154..14263772hypothetical protein
LOC_Os03g25030Os.18713.1.S1_at11/113+14268397..14272079GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g25040Os.5919.1.S1_at11/113+14274404..14276702GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3317.1.S1_at--1047--931Chr03:14249963..14249987 (25 bp)
AGGCAATGACTACGGTTATCTCTTC
LOC_Os03g25000
OsAffx.3317.1.S1_at--1101--7731Chr03:14250243..14250267 (25 bp)
GGTGTCTTCCACATTATCTTGCAAT
LOC_Os03g25000
OsAffx.3317.1.S1_at--159--751Chr03:14250266..14250290 (25 bp)
ATGTTTCAAAGCAAGTCGGCTCCTG
LOC_Os03g25000
OsAffx.3317.1.S1_at--718--9451Chr03:14250281..14250305 (25 bp)
TCGGCTCCTGAAGACTATGATGCAT
LOC_Os03g25000
OsAffx.3317.1.S1_at--180--2371Chr03:14250325..14250349 (25 bp)
AAACGACTTCTCTGAGTACCGCAAT
LOC_Os03g25000
OsAffx.3317.1.S1_at--1101--5191Chr03:14250345..14250369 (25 bp)
GCAATTGTGCACTCAAGCGCATGTT
LOC_Os03g25000
OsAffx.3317.1.S1_at--454--2271Chr03:14250385..14250409 (25 bp)
AAATCCTACGGTCACCATACTCTAT
LOC_Os03g25000
OsAffx.3317.1.S1_at--1161--431Chr03:14250428..14250452 (25 bp)
ATCTTAGAGATCATCCGTCACCTTG
LOC_Os03g25000
OsAffx.3317.1.S1_at--505--7091Chr03:14250444..14250575 (25 bp)
GTCACCTTGTCATACACGGGTTTAA
LOC_Os03g25000
OsAffx.3317.1.S1_at--224--1411Chr03:14250581..14250605 (25 bp)
AGACTATGTTAGTGCCGTGCTTCAT
LOC_Os03g25000
OsAffx.3317.1.S1_at--992--10831Chr03:14250683..14250707 (25 bp)
TTGTGGCCCATCACTTCTTGCATGA
LOC_Os03g25000
Target Sequence 
AGGCAATGACTACGGTTATCTCTTCACCCAGAACAGATCATTCACCAAAGAGATCAAACCATTGGTACCAAAAGTTACAG
CGAAGATTGAGAATGCCATCAAGGTCCTAATCAACCTAGGAGCAAAGACGATTGTTGTTCCAGGAGTTTTTCCAGTAGGG
TGTCTTCCACATTATCTTGCAATGTTTCAAAGCAAGTCGGCTCCTGAAGACTATGATGCATTTGGTTGCATAATGTGGTT
AAACGACTTCTCTGAGTACCGCAATTGTGCACTCAAGCGCATGTTGCAGCAAATCCCCCGAAATCCTACGGTCACCATAC
TCTATGGTGACTACTCCAATAACATCTTAGAGATCATCCGTCACCTTGTCATACACGGGTTTAAGAGAGAGACTATGTTA
GTGCCGTGCTTCATGAACGGCAATCTTTGCCCCGACCCATCGATATACATATCGTGGGATGAACTGCATCTCACTGAAGC
CGCTTATAAGTTTGTGGCCCATCACTTCTTGCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis