Browse Element(s) Details


Os.5919.1.S1_at

Description gb:AK069388.1
DB_XREF= gi:32979412
TID=Os.5919.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012H01, full insert sequence.
FL= gb:AK069388.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2504011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25000OsAffx.3317.1.S1_at11/113+14247529..14250741GDSL-like Lipase/Acylhydrolase family protein
LOC_Os03g25010OsAffx.13013.1.S1_at11/113+14255279..14258382GDSL-like Lipase/Acylhydrolase family protein
LOC_Os03g25020OsAffx.25218.1.S1_at11/113+14261154..14263772hypothetical protein
LOC_Os03g25030Os.18713.1.S1_at11/113+14268397..14272079GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g25040Os.5919.1.S1_at11/113+14274404..14276702GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g25050OsAffx.13014.1.S1_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050OsAffx.13014.1.S1_s_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050Os.8895.1.S1_at10/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25060Os.54316.1.S1_at11/113+14281127..14281793expressed protein
LOC_Os03g25070Os.38188.1.A1_at10/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.51355.1.S1_at2/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.22775.1.S2_a_at1/113+14294936..14302259CDPK-related protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5919.1.S1_at--889--2871Chr03:14275218..14275242 (25 bp)
AAGTGGCTGAACGACTTCTCTCAGT
LOC_Os03g25040
Os.5919.1.S1_at--768--1691Chr03:14275243..14275267 (25 bp)
ACCACAATCGTGCTCTCAAACAAAT
LOC_Os03g25040
Os.5919.1.S1_at--641--4511Chr03:14275311..14275335 (25 bp)
GCCGACTACTATGGAGCAATGTTGA
LOC_Os03g25040
Os.5919.1.S1_at--1062--8991Chr03:14275333..14275357 (25 bp)
TGAAGATAGTTCGAAGCCCTCAGAA
LOC_Os03g25040
Os.5919.1.S1_at--375--2611Chr03:14276317..14276341 (25 bp)
AACGCCGACTCGCTGGTGTGCAACG
LOC_Os03g25040
Os.5919.1.S1_at--552--1851Chr03:14276350..14276374 (25 bp)
ACGACGTCGAACCTGTGCACGGAGC
LOC_Os03g25040
Os.5919.1.S1_at--296--9031Chr03:14276365..14276389 (25 bp)
TGCACGGAGCCGTCCAGGTACATCT
LOC_Os03g25040
Os.5919.1.S1_at--543--1011Chr03:14276380..14276404 (25 bp)
AGGTACATCTCCTGGGACGGCCTGC
LOC_Os03g25040
Os.5919.1.S1_at--1119--2171Chr03:14276505..14276529 (25 bp)
ACACATTACACCTTGTTTATCCCAG
LOC_Os03g25040
Os.5919.1.S1_at--555--10431Chr03:14276579..14276603 (25 bp)
TTACCTTTATACTCCCTTTGCTAAG
LOC_Os03g25040
Os.5919.1.S1_at--139--2411Chr03:14276667..14276691 (25 bp)
AAACAAGTCCTTCCGCTACGTTGAT
LOC_Os03g25040
Target Sequence 
AAGTGGCTGAACGACTTCTCTCAGTACCACAATCGTGCTCTCAAACAAATGTTACAGAGGATTCATCATGATCCTACCGT
CACCCTAATCTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTCGAAGCCCTCAGAACAATGGGTTCACGAAGGAGA
GCGTTCTGAGGGCGTGCTGTGGGGTGGGTGGGGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCG
AACCTGTGCACGGAGCCGTCCAGGTACATCTCCTGGGACGGCCTGCATCTCACCGAGGCCGCCTACCACTACATCGCCCG
CGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACAGCCTGATCATACCCACACATTACACCTT
GTTTATCCCAGATGTATAACCAGAAATACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTG
CTAAGTTGATTGTTTGAATTTTCACTTTGATTTGTACATTTTTTTAAACTACTAGACGATGTTTTATAAAACAAGTCCTT
CCGCTACGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis