Browse Element(s) Details


Os.22775.1.S2_a_at

Description gb:CB634073
DB_XREF= gi:29629062
DB_XREF=OSIIEb13F12.r
CLONE=OSIIEb13F12
TID=Os.22775.1
CNT=15
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.22775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23264 putative ATP synthetase alpha chain mRNA, complete cds
FL= gb:AY224451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5462411/11zinc finger family protein, putative, expressed
LOC_Os03g250701/11CDPK-related protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54580Os.27041.1.S1_at11/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54580Os.14686.1.S1_at1/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54590Os.52868.1.S1_at10/112+33428231..33433233serine threonine kinase 1, putative, expressed
LOC_Os02g54590OsAffx.15330.1.S1_x_at1/112+33428231..33433233serine threonine kinase 1, putative, expressed
LOC_Os02g54600Os.9331.1.S1_at11/112+33436201..33438079Protein kinase domain containing protein, expressed
LOC_Os02g54610NANA2+33448135..33448533hypothetical protein
LOC_Os02g54624Os.22775.1.S2_a_at11/112+33451092..33455631zinc finger family protein, putative, expressed
LOC_Os02g54624Os.22775.1.S1_a_at11/112+33451092..33455631zinc finger family protein, putative, expressed
LOC_Os02g54640Os.53009.1.A1_x_at11/112+33463269..33470154Receptor family ligand binding region containing protein, expressed
LOC_Os02g54650Os.20201.1.S1_at10/112+33470359..33478115diacylglycerol kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22775.1.S2_a_at--895--1251Chr02:33455031..33455055 (25 bp)
AGATTAATGCACTTTGCCCATTGTG
LOC_Os02g54624
Os.22775.1.S2_a_at--827--5112Chr03:14300804..14300843 (25 bp)
GCACTTTGCCCATTGTGCAAATCTG
LOC_Os03g25070
Os.22775.1.S2_a_at--762--3291Chr02:33455056..33455080 (25 bp)
CAAATCTGAGATAGCGAGCTCATCT
LOC_Os02g54624
Os.22775.1.S2_a_at--620--5491Chr02:33455082..33455106 (25 bp)
GAACATCTGATACTCGTCGCTCTGA
LOC_Os02g54624
Os.22775.1.S2_a_at--33--4811Chr02:33455100..33455124 (25 bp)
GCTCTGACCACACAGATATTCCTGT
LOC_Os02g54624
Os.22775.1.S2_a_at--720--3011Chr02:33455137..33455161 (25 bp)
AATGCATTAGGGTGATCTGCTTTCT
LOC_Os02g54624
Os.22775.1.S2_a_at--806--7751Chr02:33455147..33455171 (25 bp)
GGTGATCTGCTTTCTGAGGTAATAC
LOC_Os02g54624
Os.22775.1.S2_a_at--267--5231Chr02:33455176..33455200 (25 bp)
GAATACAGTTACTTGTGGTGACCGT
LOC_Os02g54624
Os.22775.1.S2_a_at--224--8671Chr02:33455189..33455213 (25 bp)
TGTGGTGACCGTGTGCTTGTATAAA
LOC_Os02g54624
Os.22775.1.S2_a_at--406--6731Chr02:33455285..33455309 (25 bp)
GTTCTCACTGTCAACATACACGAGG
LOC_Os02g54624
Os.22775.1.S2_a_at--333--3111Chr02:33455311..33455335 (25 bp)
AATATACAATATCTACTCGTTCCAT
LOC_Os02g54624
Target Sequence 
AGATTAATGCACTTTGCCCATTGTGCAAATCTGAGATAGCGAGCTCATCTGGAACATCTGATACTCGTCGCTCTGACCAC
ACAGATATTCCTGTGCAGGAGATTGAAATGCATTAGGGTGATCTGCTTTCTGAGGTAATACGNCAGAATACAGTTACTTG
TGGTGACCGTGTGCTTGTATAAAGTTCAAGCTTTGATATGTGGATTGTAATGATGCATGGGGTTATTTTTGTTGCTGTTA
TTTTGGAGAAGACAGTTCTCACTGTCAACATACACGAGGAAATATACAATATCTACTCGTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22775.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis