Browse Element(s) Details


Os.27041.1.S1_at

Description gb:CB668900
DB_XREF= gi:29672625
DB_XREF=OSJNEd16P16.r
CLONE=OSJNEd16P16
TID=Os.27041.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27041 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568754.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5458011/11serine esterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54530NANA2+33399166..33399736Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54540Os.55090.1.S1_at11/112+33402149..33403070Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54550OsAffx.12640.1.S1_at11/112+33406395..33408410F-box domain containing protein
LOC_Os02g54550OsAffx.661.1.S1_x_at1/112+33406395..33408410F-box domain containing protein
LOC_Os02g54560Os.54548.1.S1_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54560Os.54548.1.S1_x_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54570OsAffx.24868.1.S1_at11/112+33421376..33421912SCP-like extracellular protein, expressed
LOC_Os02g54580Os.27041.1.S1_at11/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54580Os.14686.1.S1_at1/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54590Os.52868.1.S1_at10/112+33428231..33433233serine threonine kinase 1, putative, expressed
LOC_Os02g54590OsAffx.15330.1.S1_x_at1/112+33428231..33433233serine threonine kinase 1, putative, expressed
LOC_Os02g54600Os.9331.1.S1_at11/112+33436201..33438079Protein kinase domain containing protein, expressed
LOC_Os02g54610NANA2+33448135..33448533hypothetical protein
LOC_Os02g54624Os.22775.1.S2_a_at11/112+33451092..33455631zinc finger family protein, putative, expressed
LOC_Os02g54624Os.22775.1.S1_a_at11/112+33451092..33455631zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27041.1.S1_at--846--2831Chr02:33426706..33426730 (25 bp)
AAGTATCCACATATTATCCATGTTG
LOC_Os02g54580
Os.27041.1.S1_at--429--2311Chr02:33426733..33426757 (25 bp)
AAAGGAAATTCAGAGCATCATCAGC
LOC_Os02g54580
Os.27041.1.S1_at--1090--3211Chr02:33426757..33426781 (25 bp)
CAAGAGGAATCTGTAGAAGCTTCAC
LOC_Os02g54580
Os.27041.1.S1_at--1113--5391Chr02:33426772..33426796 (25 bp)
GAAGCTTCACTTACAGATAGCATGG
LOC_Os02g54580
Os.27041.1.S1_at--828--6911Chr02:33427069..33427093 (25 bp)
GTATGCTTTCATAAGAGCTGGCTAA
LOC_Os02g54580
Os.27041.1.S1_at--358--10131Chr02:33427495..33427515 (21 bp)
TATCCAGGTTAGGATCCATCCTGTT
LOC_Os02g54580
Os.27041.1.S1_at--726--7971Chr02:33427502..33427526 (25 bp)
GGATCCATCCTGTTAATTCAGACGG
LOC_Os02g54580
Os.27041.1.S1_at--52--7531Chr02:33427657..33427681 (25 bp)
GTGGACCAACATGCCTGGTTCATTA
LOC_Os02g54580
Os.27041.1.S1_at--338--7871Chr02:33427699..33427723 (25 bp)
GGTTATCATTTATCGGAGCCTGGGT
LOC_Os02g54580
Os.27041.1.S1_at--973--10331Chr02:33427707..33427731 (25 bp)
TTTATCGGAGCCTGGGTGCCTCTGA
LOC_Os02g54580
Os.27041.1.S1_at--428--7291Chr02:33427722..33427746 (25 bp)
GTGCCTCTGATTTGTTGTCTTGTAG
LOC_Os02g54580
Target Sequence 
AAGTATCCACATATTATCCATGTTGACAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTAC
AGATAGCATGGAAGAAGTGATGATCCATGNCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCT
GGCTAAGATACAATGCCCNCCNCAATATCCAGGTTAGGATCCATCCTGTTAATTCAGACGGNGAAGACGTAATCTNCCAT
TTGATAGACAATTTTNTAGTGTAGCTAAATTTCGATGAATTATTGATAAATAACANCCTTTTATACGGNGGGTTAACTCC
ATTGTNCCACTCTAGTTAGGTGATGACNCCCGTGGACCAACATGCCTGGTTCATTAGATCNCACGTGATGTAAGGTTATC
ATTTATCGGAGCCTGGGTGCCTCTGATTTGTTGTCTTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis