Browse Element(s) Details


Os.52868.1.S1_at

Description gb:AK069654.1
DB_XREF= gi:32979678
TID=Os.52868.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030L14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030L14, full insert sequence.
FL= gb:AK069654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5459010/11serine threonine kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54550OsAffx.12640.1.S1_at11/112+33406395..33408410F-box domain containing protein
LOC_Os02g54550OsAffx.661.1.S1_x_at1/112+33406395..33408410F-box domain containing protein
LOC_Os02g54560Os.54548.1.S1_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54560Os.54548.1.S1_x_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54570OsAffx.24868.1.S1_at11/112+33421376..33421912SCP-like extracellular protein, expressed
LOC_Os02g54580Os.27041.1.S1_at11/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54580Os.14686.1.S1_at1/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54590Os.52868.1.S1_at10/112+33428231..33433233serine threonine kinase 1, putative, expressed
LOC_Os02g54590OsAffx.15330.1.S1_x_at1/112+33428231..33433233serine threonine kinase 1, putative, expressed
LOC_Os02g54600Os.9331.1.S1_at11/112+33436201..33438079Protein kinase domain containing protein, expressed
LOC_Os02g54610NANA2+33448135..33448533hypothetical protein
LOC_Os02g54624Os.22775.1.S2_a_at11/112+33451092..33455631zinc finger family protein, putative, expressed
LOC_Os02g54624Os.22775.1.S1_a_at11/112+33451092..33455631zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52868.1.S1_at--754--4071Chr02:33432585..33432609 (25 bp)
CGAGATATCCATCCGCTGCTGCGAG
LOC_Os02g54590
Os.52868.1.S1_at--151--2631Chr02:33432888..33432908 (21 bp)
AACCGATATGGCGATTGAGCACAGC
LOC_Os02g54590
Os.52868.1.S1_at--80--6991Chr02:33432923..33432947 (25 bp)
GTACGACGCGGACACGAGCCAGCAA
LOC_Os02g54590
Os.52868.1.S1_at--835--7471Chr02:33432956..33432980 (25 bp)
GGGACGAAGGCTCAACTACAACTAA
LOC_Os02g54590
Os.52868.1.S1_at--213--4751Chr02:33432987..33433011 (25 bp)
GCTGACCTGAGTTTTGCACTACGAC
LOC_Os02g54590
Os.52868.1.S1_at--990--5091Chr02:33433002..33433026 (25 bp)
GCACTACGACTGCAATAGGCGTTAC
LOC_Os02g54590
Os.52868.1.S1_at--142--891Chr02:33433018..33433042 (25 bp)
AGGCGTTACTGCAAGGCTCACTTAA
LOC_Os02g54590
Os.52868.1.S1_at--194--731Chr02:33433045..33433069 (25 bp)
ATGATTTTTATCCAATGCTTCTCCT
LOC_Os02g54590
Os.52868.1.S1_at--834--631Chr02:33433059..33433083 (25 bp)
ATGCTTCTCCTGATTAATCTGAGTA
LOC_Os02g54590
Os.52868.1.S1_at--228--5991Chr02:33433107..33433131 (25 bp)
GAGACAGAGAGCCATGTTCATGCCT
LOC_Os02g54590
Os.52868.1.S1_at--416--2031NONE
ACTAGTTGTCGGTCGTTTCTTGATC
NONE
Target Sequence 
CGAGATATCCATCCGCTGCTGCGAGCTCCGCCGGAAGGACCGCCCCGACCTCGCCACCGTCGTGCTCCCGGAGCTCAACC
GCCTCCGCGCCCTCGGCGAGGACAACATGCAGCTCTGCAACACCATGAGCGGCGGCGGCCGGAGCAGCATGCACAGCTCG
CCCTACAACAGCAACTCCTCCATGCATCAACCTCATCGACAAACCGATATGGCGATTGAGCACAGCGTAGGGAGGTCGTC
GTACGACGCGGACACGAGCCAGCAAGCCATGCAGGGACGAAGGCTCAACTACAACTAAATTAAAGCTGACCTGAGTTTTG
CACTACGACTGCAATAGGCGTTACTGCAAGGCTCACTTAAGCATGATTTTTATCCAATGCTTCTCCTGATTAATCTGAGT
AGGAAGCTACTGTTTGTTAATGCAGAGACAGAGAGCCATGTTCATGCCTACATGTTGGTGTGGTTGTAAACTAGTTGTCG
GTCGTTTCTTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis