Browse Element(s) Details


Os.54548.1.S1_at

Description gb:AK105575.1
DB_XREF= gi:32990784
TID=Os.54548.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-D06, full insert sequence.
FL= gb:AK105575.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5456011/11Pathogenesis-related protein PR-1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54520OsAffx.3071.1.S1_at11/112+33392995..33396981Myb-like DNA-binding domain containing protein
LOC_Os02g54530NANA2+33399166..33399736Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54540Os.55090.1.S1_at11/112+33402149..33403070Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54550OsAffx.12640.1.S1_at11/112+33406395..33408410F-box domain containing protein
LOC_Os02g54550OsAffx.661.1.S1_x_at1/112+33406395..33408410F-box domain containing protein
LOC_Os02g54560Os.54548.1.S1_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54560Os.54548.1.S1_x_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54570OsAffx.24868.1.S1_at11/112+33421376..33421912SCP-like extracellular protein, expressed
LOC_Os02g54580Os.27041.1.S1_at11/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54580Os.14686.1.S1_at1/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54590Os.52868.1.S1_at10/112+33428231..33433233serine threonine kinase 1, putative, expressed
LOC_Os02g54590OsAffx.15330.1.S1_x_at1/112+33428231..33433233serine threonine kinase 1, putative, expressed
LOC_Os02g54600Os.9331.1.S1_at11/112+33436201..33438079Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54548.1.S1_at--26--9911Chr02:33420078..33420102 (25 bp)
TACTACCACAACCTGGTGCGGCTGG
LOC_Os02g54560
Os.54548.1.S1_at--1156--8331Chr02:33420136..33420160 (25 bp)
GGCTGGAGTCGTACGCGCGGTGGTG
LOC_Os02g54560
Os.54548.1.S1_at--443--6131Chr02:33420297..33420321 (25 bp)
GAGGGCGTCGACTACTCGTACGCCG
LOC_Os02g54560
Os.54548.1.S1_at--851--1811Chr02:33420360..33420384 (25 bp)
ACCCAGATCGTGTGGCGCGGCACCA
LOC_Os02g54560
Os.54548.1.S1_at--959--6011Chr02:33420471..33420495 (25 bp)
GAGAGGCCGTACTGAATGAGCAGTA
LOC_Os02g54560
Os.54548.1.S1_at--91--8911Chr02:33420487..33420511 (25 bp)
TGAGCAGTACACTAGGATACCACAG
LOC_Os02g54560
Os.54548.1.S1_at--63--7031Chr02:33420493..33420517 (25 bp)
GTACACTAGGATACCACAGAGTTTG
LOC_Os02g54560
Os.54548.1.S1_at--224--4371Chr02:33420506..33420530 (25 bp)
CCACAGAGTTTGTCAGGATTGTCCT
LOC_Os02g54560
Os.54548.1.S1_at--1143--3471Chr02:33420519..33420543 (25 bp)
CAGGATTGTCCTGGATGGAAATGAT
LOC_Os02g54560
Os.54548.1.S1_at--570--771Chr02:33420552..33420576 (25 bp)
ATGTGCATGTACAGCTGCTGAATAA
LOC_Os02g54560
Os.54548.1.S1_at--597--7031Chr02:33420560..33420584 (25 bp)
GTACAGCTGCTGAATAAAAGTTTCA
LOC_Os02g54560
Target Sequence 
TACTACCACAACCTGGTGCGGCTGGCGCGGTGGGAGCTGCCGCTGGCGTGGTCGCCGCGGCTGGAGTCGTACGCGCGGTG
GTGGGCGGCGCAGCGGCGCGGCGACTGCGCGCTGCGCCACTCGTTCCCGGAGGGGCAGTTCGCGCTCGGGGAGAACATCT
TCTGGGGCGGGGCCGGCGGCGCGTGGCGCCCCGGCGACGCCGTCAAGGACTGGGCCGCCGAGGGCGTCGACTACTCGTAC
GCCGCCAACGCGTGCGCGGCCGGGCGCGAGTGCGGCCACTACACCCAGATCGTGTGGCGCGGCACCACCTCCGTCGGCTG
CGCCCGCGTCGCCTGCGACGACGGCGGCGTCTTCATGACCTGCAACTACTACCCGCCGGGTAACGTCGTCGGCGAGAGGC
CGTACTGAATGAGCAGTACACTAGGATACCACAGAGTTTGTCAGGATTGTCCTGGATGGAAATGATGGAATGAGATGTGC
ATGTACAGCTGCTGAATAAAAGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis