Browse Element(s) Details


OsAffx.3071.1.S1_at

Description tigr:9630.m05407
TID=OsAffx.3071.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to typical P-type R2R3 Myb protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5452011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54500Os.7331.2.S1_s_at11/112+33366546..33374358expressed protein
LOC_Os02g54500OsAffx.12639.1.S1_at11/112+33366546..33374358expressed protein
LOC_Os02g54500Os.7331.1.A1_at10/112+33366546..33374358expressed protein
LOC_Os02g54500Os.49132.1.S1_at6/112+33366546..33374358expressed protein
LOC_Os02g54510Os.22443.1.S1_at9/112+33380785..33387027Protein kinase domain containing protein, expressed
LOC_Os02g54520OsAffx.3071.1.S1_at11/112+33392995..33396981Myb-like DNA-binding domain containing protein
LOC_Os02g54530NANA2+33399166..33399736Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54540Os.55090.1.S1_at11/112+33402149..33403070Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54550OsAffx.12640.1.S1_at11/112+33406395..33408410F-box domain containing protein
LOC_Os02g54550OsAffx.661.1.S1_x_at1/112+33406395..33408410F-box domain containing protein
LOC_Os02g54560Os.54548.1.S1_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54560Os.54548.1.S1_x_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54570OsAffx.24868.1.S1_at11/112+33421376..33421912SCP-like extracellular protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3071.1.S1_at--379--2951Chr02:33396410..33396434 (25 bp)
AAGGCCTCTACAACAGCGCGTTCGG
LOC_Os02g54520
OsAffx.3071.1.S1_at--356--5831Chr02:33396678..33396702 (25 bp)
GACCGGTTCGAACTACATGCCGGGA
LOC_Os02g54520
OsAffx.3071.1.S1_at--1007--7231Chr02:33396703..33396727 (25 bp)
GTCGCCGGTGTAGAGATGACCTCGT
LOC_Os02g54520
OsAffx.3071.1.S1_at--365--1931Chr02:33396767..33396791 (25 bp)
ACGGTCTCCACGACGAGCTATACGA
LOC_Os02g54520
OsAffx.3071.1.S1_at--583--5691Chr02:33396790..33396814 (25 bp)
GACTTCCTCTTCAAGTGCGAGTCGA
LOC_Os02g54520
OsAffx.3071.1.S1_at--327--3651Chr02:33396798..33396822 (25 bp)
CTTCAAGTGCGAGTCGATCGGCGGA
LOC_Os02g54520
OsAffx.3071.1.S1_at--1130--2931Chr02:33396827..33396851 (25 bp)
AAGGCGGGATCATCCCTTCGTCGTT
LOC_Os02g54520
OsAffx.3071.1.S1_at--750--9411Chr02:33396844..33396868 (25 bp)
TCGTCGTTGCCGGAGCTGCAGTGCC
LOC_Os02g54520
OsAffx.3071.1.S1_at--699--1871Chr02:33396896..33396920 (25 bp)
ACGAGAAGTTCTCGACGTGGACGTC
LOC_Os02g54520
OsAffx.3071.1.S1_at--537--8531Chr02:33396913..33396937 (25 bp)
TGGACGTCGTCGTCTTGCGACTACG
LOC_Os02g54520
OsAffx.3071.1.S1_at--1025--9391Chr02:33396922..33396946 (25 bp)
TCGTCTTGCGACTACGGTTCGGGCG
LOC_Os02g54520
Target Sequence 
AAGGCCTCTACAACAGCGCGTTCGGCTGCACCACCACCAGCAGCAACGGCGGCGGCGTCGGCGTCGCGCCGCCGCAGTGG
CCGAAGCTCGAGGCGCTGCTGCCGAGCAGACCGCTCCCGGCCGTGCAGCCGACGGACGCCGTCGTCGCCACCGTGCAACA
CCCCCATCATTTGGTCGTCGGCGGCCATACCCTCGCCACCGCCGCCGCCGCCGCCGCCACCACGTCGGAGGCGTTCCAAG
CCGCCGAGCACCTCGACCCTGCGGCGGCGACCGGTTCGAACTACATGCCGGGAGTCGCCGGTGTAGAGATGACCTCGTCG
TCGTCAATGGCGGGTGGTGGTGGGTTCGTCGCCGGCTACGGTCTCCACGACGAGCTATACGACTTCCTCTTCAAGTGCGA
GTCGATCGGCGGAGCGCAAGGCGGGATCATCCCTTCGTCGTTGCCGGAGCTGCAGTGCCCGGACGGCAGCGCCATCATCG
GCGCCGACGAGAAGTTCTCGACGTGGACGTCGTCGTCTTGCGACTACGGTTCGGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis