Browse Element(s) Details


Os.7331.2.S1_s_at

Description gb:CB626616
DB_XREF= gi:29621605
DB_XREF=OSIIEa16P19.f
CLONE=OSIIEa16P19
TID=Os.7331.2
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7331 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47940 (A.thaliana) T47940 hypothetical protein F2A19.80 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5450011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54430OsAffx.9060.1.S1_at6/112+33343419..33345131transposon protein, putative, Pong sub-class
LOC_Os02g54440Os.41074.1.S1_at3/112+33345609..33347572transposon protein, putative, Pong sub-class
LOC_Os02g54450OsAffx.3069.1.S1_at11/112+33348307..33349248hypro1, putative
LOC_Os02g54460NANA2+33350361..33351483hypothetical protein
LOC_Os02g54470Os.4986.1.S1_at10/112+33353475..3335552560S ribosomal protein L33-B, putative, expressed
LOC_Os02g54480OsAffx.24866.2.S1_at11/112+33356001..33357978hypothetical protein
LOC_Os02g54480OsAffx.24866.1.S1_at4/112+33356001..33357978hypothetical protein
LOC_Os02g54490OsAffx.3070.1.S1_at11/112+33358394..33365118expressed protein
LOC_Os02g54500Os.7331.2.S1_s_at11/112+33366546..33374358expressed protein
LOC_Os02g54500OsAffx.12639.1.S1_at11/112+33366546..33374358expressed protein
LOC_Os02g54500Os.7331.1.A1_at10/112+33366546..33374358expressed protein
LOC_Os02g54500Os.49132.1.S1_at6/112+33366546..33374358expressed protein
LOC_Os02g54510Os.22443.1.S1_at9/112+33380785..33387027Protein kinase domain containing protein, expressed
LOC_Os02g54520OsAffx.3071.1.S1_at11/112+33392995..33396981Myb-like DNA-binding domain containing protein
LOC_Os02g54530NANA2+33399166..33399736Pathogenesis-related protein PR-1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7331.2.S1_s_at--105--6911Chr02:33370371..33370395 (25 bp)
GTATCCGCTTGGTCTTCTTCCAAAT
LOC_Os02g54500
Os.7331.2.S1_s_at--733--1471Chr02:33370423..33370447 (25 bp)
AGAATGTCCTTCTCGACTGCAGAGT
LOC_Os02g54500
Os.7331.2.S1_s_at--335--5731Chr02:33370437..33370461 (25 bp)
GACTGCAGAGTTTCCATGCTTTGAA
LOC_Os02g54500
Os.7331.2.S1_s_at--374--231Chr02:33370483..33370507 (25 bp)
ATATTGCATTGTTTGCTGCGGCATC
LOC_Os02g54500
Os.7331.2.S1_s_at--154--1451Chr02:33371484..33371508 (25 bp)
AGAAGCTCTGCGTTTGGCAAACTTG
LOC_Os02g54500
Os.7331.2.S1_s_at--726--2631Chr02:33371519..33371543 (25 bp)
AACCTCACTTCTCTAGATGTTTGGA
LOC_Os02g54500
Os.7331.2.S1_s_at--838--2951Chr02:33371543..33371567 (25 bp)
AATGGCTCCTGTTTACGGTATTTGA
LOC_Os02g54500
Os.7331.2.S1_s_at--1113--8511Chr02:33371791..33371815 (25 bp)
TGTGACCTACTTCGAAACTTTCCAG
LOC_Os02g54500
Os.7331.2.S1_s_at--327--5531Chr02:33371847..33371871 (25 bp)
GAAAACTGATGGTCGGCACTGGGCA
LOC_Os02g54500
Os.7331.2.S1_s_at--539--8211Chr02:33372217..33372241 (25 bp)
GGAATGCTTCCAACGGCGATGGTAT
LOC_Os02g54500
Os.7331.2.S1_s_at--1158--811Chr02:33372235..33372259 (25 bp)
ATGGTATAGGACTGCTGCTTGCTAC
LOC_Os02g54500
Target Sequence 
GTATCCGCTTGGTCTTCTTCCAAATGTTGGTGTAGTTGTTGGTATTTCTCAGAGAATGTCCTTCTCGACTGCAGAGTTTC
CATGCTTTGAACCTTCTCCTCAAGCCCAAACAATATTGCATTGTTTGCTGCGGCATCTCCTTCAGAGAGACAAACATGAA
GAAGCTCTGCGTTTGGCAAACTTGTCTGCAGAGAAACCTCACTTCTCTAGATGTTTGGAATGGCTCCTGTTTACGGTATT
TGATGCAGAGATATCAAGCCAAAGTGCTTCAAAAAACCAGCTTTCGCAGAAAAATGAACCTGCAAAGAAGTCTCTTCTAG
ACAAGACATGTGACCTACTTCGAAACTTTCCAGAATACATGGATGTTGTAGTCAGTGTTGCTAGGAAAACTGATGGTCGG
CACTGGGCAGATCTTTTCCATGCAGCTGGACGATCCACAGAGATGTTTGAGGAATGCTTCCAACGGCGATGGTATAGGAC
TGCTGCTTGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7331.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis