Browse Element(s) Details


Os.22443.1.S1_at

Description gb:AK067937.1
DB_XREF= gi:32977955
TID=Os.22443.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22443 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122E21, full insert sequence.
FL= gb:AK067937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g545109/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54480OsAffx.24866.2.S1_at11/112+33356001..33357978hypothetical protein
LOC_Os02g54480OsAffx.24866.1.S1_at4/112+33356001..33357978hypothetical protein
LOC_Os02g54490OsAffx.3070.1.S1_at11/112+33358394..33365118expressed protein
LOC_Os02g54500Os.7331.2.S1_s_at11/112+33366546..33374358expressed protein
LOC_Os02g54500OsAffx.12639.1.S1_at11/112+33366546..33374358expressed protein
LOC_Os02g54500Os.7331.1.A1_at10/112+33366546..33374358expressed protein
LOC_Os02g54500Os.49132.1.S1_at6/112+33366546..33374358expressed protein
LOC_Os02g54510Os.22443.1.S1_at9/112+33380785..33387027Protein kinase domain containing protein, expressed
LOC_Os02g54520OsAffx.3071.1.S1_at11/112+33392995..33396981Myb-like DNA-binding domain containing protein
LOC_Os02g54530NANA2+33399166..33399736Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54540Os.55090.1.S1_at11/112+33402149..33403070Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54550OsAffx.12640.1.S1_at11/112+33406395..33408410F-box domain containing protein
LOC_Os02g54550OsAffx.661.1.S1_x_at1/112+33406395..33408410F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22443.1.S1_at--533--631Chr02:33386431..33386455 (25 bp)
ATGCTATATACCTTATCCTCTGGAC
LOC_Os02g54510
Os.22443.1.S1_at--1032--3631Chr02:33386504..33386528 (25 bp)
CTTCCGGCTGGCACATGTTAGATGT
LOC_Os02g54510
Os.22443.1.S1_at--960--8131Chr02:33386556..33386580 (25 bp)
GGACACAGTTATCTTTTTGCACAAA
LOC_Os02g54510
Os.22443.1.S1_at--1077--3491Chr02:33386675..33386699 (25 bp)
CATGGTTCTTCCCTGTATAGATCAT
LOC_Os02g54510
Os.22443.1.S1_at--635--9271Chr02:33386715..33386739 (25 bp)
TCCTGGGTCCATGCAATTATTCTTC
LOC_Os02g54510
Os.22443.1.S1_at--671--3131Chr02:33386729..33386753 (25 bp)
AATTATTCTTCCGTGCCAATCAATC
LOC_Os02g54510
Os.22443.1.S1_at--22--7091Chr02:33386774..33386798 (25 bp)
GTCAATAGTGGTGGTGCATCGCTTA
LOC_Os02g54510
Os.22443.1.S1_at--1072--4971NONE
GCATCGCTTAAAATGACCTGGTCTT
NONE
Os.22443.1.S1_at--841--7811Chr02:33386809..33386832 (24 bp)
GGTCTTTGTTTCATCTTTTGACAGC
LOC_Os02g54510
Os.22443.1.S1_at--1043--311Chr02:33386967..33386991 (25 bp)
ATACGGCATCAATCATGTGGTGTCA
LOC_Os02g54510
Os.22443.1.S1_at--763--6871Chr02:33387005..33387029 (25 bp)
GTATTTTCTATTGTCATTCCTCCAA
NONE
Target Sequence 
ATGCTATATACCTTATCCTCTGGACNGGAACTATAGAAATAGAAATGTAATGTAAATAAGCTTCGGCTTGCTTCTTCCGG
CTGGCACATGTTAGATGTGCACAGTAGTAGACACTGTTCAAAGTTGGACACAGTTATCTTTTTGCACAAAATTGTGTCCT
AAGGAAAGAGGGGACAACTCGAACAGAGATATCCTTATTCAGATTGTAAATAGCTCACGAATAAGATTTCTATGTCACTT
GCAACATGGTTCTTCCCTGTATAGATCATCAGTGGCACTATTCCTCCTGGGTCCATGCAATTATTCTTCCGTGCCAATCA
ATCCGTGGATGTTTTTGAAGGATGTCAATAGTGGTGGTGCATCGCTTAAAATGACCTGGTCTTTGTTTCATCTTTTGACA
GCGTAGTTTGCTATGAAATATCTTCCCAGAACAATCTTTTTATAATTGGGAGAAATTTTGAGCCAGAACTCTTCATAATA
AAAGTTGCTAGCATTTTTCTTTATCATAAATCCATCCTTTTCATCGTATAATAAGTATACGGCATCAATCATGTGGTGTC
AAAATGGACTTGCAGTATTTTCTATTGTCATTCCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis